16725814017

Committed 04 Aug 2025 02:09PM UTC coverage: 86.311% (-3.3%) from 89.629%

Build # 16725814017

Build Type

push

github

Committed by

web-flow

Commit Message

Release v1.1.0

Run Details

350 of 449 new or added lines in 22 files covered. (77.95%)

9 existing lines in 2 files now uncovered.

2396 of 2776 relevant lines covered (86.31%)

0.86 hits per line

Source File
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52.94

/src/parser/MetadataParser.py

from abc import ABC, abstractmethod
from typing import List
from io import StringIO

import xmltodict
import json
import logging

import configparser
#from configparser import ConfigParser, NoInterpolation

class MetadataParser(ABC):

    @staticmethod
    @abstractmethod
    def expected_input_format() -> str:
        pass

    @staticmethod
    @abstractmethod
    def supported_input_sources() -> List[str]:
        """
        Provides informative output about the input sources that are supported by implementation of this parser.
        The output is not specified and should only be used for informative reasons (such as logging and printing)
        :return:
        """
        pass

    def _read_input(self, payload):
        """
        creates metadata dictionary from payload
        :param payload: input String
        :return: metadata dict
        """
        if self.expected_input_format() == "xml":
            self.parsed_data = xmltodict.parse(payload)
            return self.parsed_data
        if self.expected_input_format() == "json":
            self.parsed_data = json.loads(payload)
            return self.parsed_data
        if self.expected_input_format() == "text/plain":
            self.parsed_data = {}
            config = configparser.ConfigParser(interpolation=configparser.Interpolation()) # disables interpolation explicitly
            config.optionxform = str # do this if you do not want to read in data as lowercase
            config.read_string(payload)
            for section in config.sections():
                items = config.items(section)
                self.parsed_data[section] = dict(items)
            return self.parsed_data
        logging.error("Parsing of input format not implemented: {}",format(self.expected_input_format()))
        return None

1	from abc import ABC, abstractmethod	1✔
2	from typing import List	1✔
3	from io import StringIO	1✔
4
5	import xmltodict	1✔
6	import json	1✔
7	import logging	1✔
8
9	import configparser	1✔
10	#from configparser import ConfigParser, NoInterpolation
11
12	class MetadataParser(ABC):	1✔
13
14	@staticmethod	1✔
15	@abstractmethod	1✔
16	def expected_input_format() -> str:	1✔
17	pass	×
18
19	@staticmethod	1✔
20	@abstractmethod	1✔
21	def supported_input_sources() -> List[str]:	1✔
22	"""
23	Provides informative output about the input sources that are supported by implementation of this parser.
24	The output is not specified and should only be used for informative reasons (such as logging and printing)
25	:return:
26	"""
27	pass	×
28
29	def _read_input(self, payload):	1✔
30	"""
31	creates metadata dictionary from payload
32	:param payload: input String
33	:return: metadata dict
34	"""
35	if self.expected_input_format() == "xml":	1✔
36	self.parsed_data = xmltodict.parse(payload)	1✔
37	return self.parsed_data	1✔
38	if self.expected_input_format() == "json":	×
39	self.parsed_data = json.loads(payload)	×
40	return self.parsed_data	×
NEW 41	if self.expected_input_format() == "text/plain":	×
NEW 42	self.parsed_data = {}	×
NEW 43	config = configparser.ConfigParser(interpolation=configparser.Interpolation()) # disables interpolation explicitly	×
NEW 44	config.optionxform = str # do this if you do not want to read in data as lowercase	×
NEW 45	config.read_string(payload)	×
NEW 46	for section in config.sections():	×
NEW 47	items = config.items(section)	×
NEW 48	self.parsed_data[section] = dict(items)	×
NEW 49	return self.parsed_data	×
50	logging.error("Parsing of input format not implemented: {}",format(self.expected_input_format()))	×
51	return None	×

kit-data-manager / tomo_mapper / 16725814017

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