15430655463

Committed 04 Jun 2025 12:26AM UTC coverage: 40.974% (+17.1%) from 23.832%

Build # 15430655463

Build Type

push

github

Committed by

paulmthompson

Commit Message

fix self copy with mask data

Run Details

5 of 5 new or added lines in 2 files covered. (100.0%)

945 existing lines in 24 files now uncovered.

3003 of 7329 relevant lines covered (40.97%)

731.35 hits per line

Source File
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0.0

/src/WhiskerToolbox/DataManager/transforms/TransformRegistry.cpp

#include "TransformRegistry.hpp"

#include "transforms/Masks/mask_area.hpp"
#include "transforms/Masks/mask_to_line.hpp"
#include "transforms/Masks/mask_skeletonize.hpp"
#include "transforms/AnalogTimeSeries/analog_event_threshold.hpp"
#include "transforms/AnalogTimeSeries/analog_interval_threshold.hpp"
#include "transforms/AnalogTimeSeries/analog_hilbert_phase.hpp"
#include "transforms/AnalogTimeSeries/analog_scaling.hpp"
#include "transforms/Lines/line_angle.hpp"
#include "transforms/Lines/line_min_point_dist.hpp"
#include "transforms/Lines/line_resample.hpp"
#include "transforms/Lines/line_curvature.hpp"
#include "transforms/Lines/line_subsegment.hpp"
#include "transforms/Lines/line_point_extraction.hpp"
#include "transforms/Lines/line_clip.hpp"

#include <iostream>// For init messages
#include <map>
#include <memory>// unique_ptr
#include <string>
#include <typeindex>
#include <variant>// Needed for the public interface
#include <vector>


TransformRegistry::TransformRegistry() {

    std::cout << "Initializing Operation Registry..." << std::endl;

    _registerOperation(std::make_unique<MaskAreaOperation>());
    _registerOperation(std::make_unique<MaskToLineOperation>());
    _registerOperation(std::make_unique<MaskSkeletonizeOperation>());
    _registerOperation(std::make_unique<EventThresholdOperation>());
    _registerOperation(std::make_unique<IntervalThresholdOperation>());
    _registerOperation(std::make_unique<HilbertPhaseOperation>());
    _registerOperation(std::make_unique<AnalogScalingOperation>());
    _registerOperation(std::make_unique<LineAngleOperation>());
    _registerOperation(std::make_unique<LineMinPointDistOperation>());
    _registerOperation(std::make_unique<LineResampleOperation>());
    _registerOperation(std::make_unique<LineCurvatureOperation>());
    _registerOperation(std::make_unique<LineSubsegmentOperation>());
    _registerOperation(std::make_unique<LinePointExtractionOperation>());
    _registerOperation(std::make_unique<LineClipOperation>());

    _computeApplicableOperations();
    std::cout << "Operation Registry Initialized." << std::endl;
}

std::vector<std::string> TransformRegistry::getOperationNamesForVariant(DataTypeVariant const & dataVariant) const {
    // Get the type_index of the type currently stored in the variant.
    // Note: std::variant::type() returns the type_index of the *alternative*,
    // which in our case IS the std::shared_ptr<T>. This matches what
    // getTargetInputTypeIndex() should return.
    auto current_type_index = std::visit([](auto & v) -> std::type_index { return typeid(v); }, dataVariant);

    // Look up the type index in the pre-computed map
    auto it = type_index_to_op_names_.find(current_type_index);
    if (it != type_index_to_op_names_.end()) {
        return it->second;// Return the pre-computed list of names
    } else {
        // No registered operation targets this specific type_index.
        // This is normal if a data type has no operations defined for it.
        return {};// Return empty vector
    }
}

TransformOperation * TransformRegistry::findOperationByName(std::string const & operation_name) const {
    auto it = name_to_operation_.find(operation_name);
    if (it != name_to_operation_.end()) {
        return it->second;
    } else {
        // std::cerr << "Warning: Requested operation name not found: '" << operation_name << "'" << std::endl;
        return nullptr;
    }
}

void TransformRegistry::_registerOperation(std::unique_ptr<TransformOperation> op) {
    if (!op) return;
    std::string op_name = op->getName();
    if (name_to_operation_.count(op_name)) {
        std::cerr << "Warning: Operation with name '" << op_name << "' already registered." << std::endl;
        return;
    }
    std::cout << "Registering operation: " << op_name
              << " (Targets type index: " << op->getTargetInputTypeIndex().name() << ")"// Debug info
              << std::endl;
    name_to_operation_[op_name] = op.get();
    all_operations_.push_back(std::move(op));
}

void TransformRegistry::_computeApplicableOperations() {
    std::cout << "Computing applicable operations based on registered operations..." << std::endl;
    type_index_to_op_names_.clear();// Start fresh

    for (auto const & op_ptr: all_operations_) {
        if (!op_ptr) continue;
        // Get the type index this operation says it targets
        std::type_index target_type_index = op_ptr->getTargetInputTypeIndex();
        // Get the user-facing name of the operation
        std::string op_name = op_ptr->getName();

        // Add this operation's name to the list for its target type index
        type_index_to_op_names_[target_type_index].push_back(op_name);
    }

    std::cout << "Finished computing applicable operations." << std::endl;
// Debug print (optional): shows mangled names for type_index keys internally
#ifndef NDEBUG// Example: Only print in debug builds
    for (auto const & pair: type_index_to_op_names_) {
        std::cout << "  TypeIndex Hash(" << pair.first.hash_code()
                  << ", Name=" << pair.first.name() << ") supports: ";
        for (auto const & name: pair.second) std::cout << "'" << name << "' ";
        std::cout << std::endl;
    }
#endif
}

1	#include "TransformRegistry.hpp"
2
3	#include "transforms/Masks/mask_area.hpp"
4	#include "transforms/Masks/mask_to_line.hpp"
5	#include "transforms/Masks/mask_skeletonize.hpp"
6	#include "transforms/AnalogTimeSeries/analog_event_threshold.hpp"
7	#include "transforms/AnalogTimeSeries/analog_interval_threshold.hpp"
8	#include "transforms/AnalogTimeSeries/analog_hilbert_phase.hpp"
9	#include "transforms/AnalogTimeSeries/analog_scaling.hpp"
10	#include "transforms/Lines/line_angle.hpp"
11	#include "transforms/Lines/line_min_point_dist.hpp"
12	#include "transforms/Lines/line_resample.hpp"
13	#include "transforms/Lines/line_curvature.hpp"
14	#include "transforms/Lines/line_subsegment.hpp"
15	#include "transforms/Lines/line_point_extraction.hpp"
16	#include "transforms/Lines/line_clip.hpp"
17
18	#include <iostream>// For init messages
19	#include <map>
20	#include <memory>// unique_ptr
21	#include <string>
22	#include <typeindex>
23	#include <variant>// Needed for the public interface
24	#include <vector>
25
26
27	TransformRegistry::TransformRegistry() {	×
28
29	std::cout << "Initializing Operation Registry..." << std::endl;	×
30
31	_registerOperation(std::make_unique<MaskAreaOperation>());	×
UNCOV 32	_registerOperation(std::make_unique<MaskToLineOperation>());	×
UNCOV 33	_registerOperation(std::make_unique<MaskSkeletonizeOperation>());	×
UNCOV 34	_registerOperation(std::make_unique<EventThresholdOperation>());	×
UNCOV 35	_registerOperation(std::make_unique<IntervalThresholdOperation>());	×
36	_registerOperation(std::make_unique<HilbertPhaseOperation>());	×
UNCOV 37	_registerOperation(std::make_unique<AnalogScalingOperation>());	×
UNCOV 38	_registerOperation(std::make_unique<LineAngleOperation>());	×
39	_registerOperation(std::make_unique<LineMinPointDistOperation>());	×
40	_registerOperation(std::make_unique<LineResampleOperation>());	×
41	_registerOperation(std::make_unique<LineCurvatureOperation>());	×
UNCOV 42	_registerOperation(std::make_unique<LineSubsegmentOperation>());	×
UNCOV 43	_registerOperation(std::make_unique<LinePointExtractionOperation>());	×
UNCOV 44	_registerOperation(std::make_unique<LineClipOperation>());	×
45
UNCOV 46	_computeApplicableOperations();	×
UNCOV 47	std::cout << "Operation Registry Initialized." << std::endl;	×
UNCOV 48	}	×
49
50	std::vector<std::string> TransformRegistry::getOperationNamesForVariant(DataTypeVariant const & dataVariant) const {	×
51	// Get the type_index of the type currently stored in the variant.
52	// Note: std::variant::type() returns the type_index of the alternative,
53	// which in our case IS the std::shared_ptr<T>. This matches what
54	// getTargetInputTypeIndex() should return.
55	auto current_type_index = std::visit([](auto & v) -> std::type_index { return typeid(v); }, dataVariant);	×
56
57	// Look up the type index in the pre-computed map
UNCOV 58	auto it = type_index_to_op_names_.find(current_type_index);	×
59	if (it != type_index_to_op_names_.end()) {	×
60	return it->second;// Return the pre-computed list of names	×
61	} else {
62	// No registered operation targets this specific type_index.
63	// This is normal if a data type has no operations defined for it.
64	return {};// Return empty vector	×
65	}
66	}
67
68	TransformOperation * TransformRegistry::findOperationByName(std::string const & operation_name) const {	×
69	auto it = name_to_operation_.find(operation_name);	×
70	if (it != name_to_operation_.end()) {	×
71	return it->second;	×
72	} else {
73	// std::cerr << "Warning: Requested operation name not found: '" << operation_name << "'" << std::endl;
74	return nullptr;	×
75	}
76	}
77
78	void TransformRegistry::_registerOperation(std::unique_ptr<TransformOperation> op) {	×
UNCOV 79	if (!op) return;	×
80	std::string op_name = op->getName();	×
UNCOV 81	if (name_to_operation_.count(op_name)) {	×
82	std::cerr << "Warning: Operation with name '" << op_name << "' already registered." << std::endl;	×
UNCOV 83	return;	×
84	}
85	std::cout << "Registering operation: " << op_name
86	<< " (Targets type index: " << op->getTargetInputTypeIndex().name() << ")"// Debug info	×
UNCOV 87	<< std::endl;	×
88	name_to_operation_[op_name] = op.get();	×
UNCOV 89	all_operations_.push_back(std::move(op));	×
UNCOV 90	}	×
91
92	void TransformRegistry::_computeApplicableOperations() {	×
93	std::cout << "Computing applicable operations based on registered operations..." << std::endl;	×
94	type_index_to_op_names_.clear();// Start fresh	×
95
UNCOV 96	for (auto const & op_ptr: all_operations_) {	×
UNCOV 97	if (!op_ptr) continue;	×
98	// Get the type index this operation says it targets
UNCOV 99	std::type_index target_type_index = op_ptr->getTargetInputTypeIndex();	×
100	// Get the user-facing name of the operation
UNCOV 101	std::string op_name = op_ptr->getName();	×
102
103	// Add this operation's name to the list for its target type index
UNCOV 104	type_index_to_op_names_[target_type_index].push_back(op_name);	×
UNCOV 105	}	×
106
UNCOV 107	std::cout << "Finished computing applicable operations." << std::endl;	×
108	// Debug print (optional): shows mangled names for type_index keys internally
109	#ifndef NDEBUG// Example: Only print in debug builds
UNCOV 110	for (auto const & pair: type_index_to_op_names_) {	×
UNCOV 111	std::cout << " TypeIndex Hash(" << pair.first.hash_code()	×
UNCOV 112	<< ", Name=" << pair.first.name() << ") supports: ";	×
UNCOV 113	for (auto const & name: pair.second) std::cout << "'" << name << "' ";	×
UNCOV 114	std::cout << std::endl;	×
115	}
116	#endif
UNCOV 117	}	×

paulmthompson / WhiskerToolbox / 15430655463

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