#5880

Committed 12 May 2025 01:41PM UTC coverage: 78.691% (-0.07%) from 78.764%

Build # #5880

Build Type

push

Committed by

Commit Message

[DT-400-maven]: Bump the maven-dependencies group with 2 updates (#2525)

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Run Details

10063 of 12788 relevant lines covered (78.69%)

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96.61

/src/main/java/org/broadinstitute/consent/http/db/mapper/DarCollectionReducer.java

package org.broadinstitute.consent.http.db.mapper;

import java.util.Map;
import java.util.Objects;
import org.broadinstitute.consent.http.models.DarCollection;
import org.broadinstitute.consent.http.models.DataAccessRequest;
import org.broadinstitute.consent.http.models.DataAccessRequestData;
import org.broadinstitute.consent.http.models.Election;
import org.broadinstitute.consent.http.models.Institution;
import org.broadinstitute.consent.http.models.LibraryCard;
import org.broadinstitute.consent.http.models.User;
import org.broadinstitute.consent.http.models.UserProperty;
import org.broadinstitute.consent.http.models.Vote;
import org.jdbi.v3.core.mapper.MappingException;
import org.jdbi.v3.core.result.LinkedHashMapRowReducer;
import org.jdbi.v3.core.result.RowView;

public class DarCollectionReducer
    implements LinkedHashMapRowReducer<Integer, DarCollection>, RowMapperHelper {

  @Override
  public void accumulate(Map<Integer, DarCollection> map, RowView rowView) {
    DataAccessRequest dar = null;
    Election election = null;
    Vote vote = null;
    User user = null;
    UserProperty userProperty = null;
    Institution institution = null;
    LibraryCard libraryCard = null;
    DarCollection collection =
        map.computeIfAbsent(
            rowView.getColumn("collection_id", Integer.class),
            id -> rowView.getRow(DarCollection.class));
    if (Objects.nonNull(collection) && Objects.nonNull(collection.getCreateUser())) {
      user = collection.getCreateUser();
    }
    try {
      if (Objects.nonNull(rowView.getColumn("up_property_id", Integer.class))) {
        userProperty = rowView.getRow(UserProperty.class);
      }
      if (Objects.isNull(user) && Objects.nonNull(rowView.getColumn("u_user_id", Integer.class))) {
        user = rowView.getRow(User.class);
      }
      if (Objects.nonNull(rowView.getColumn("i_id", Integer.class))) {
        institution = rowView.getRow(Institution.class);
      }
      if (Objects.nonNull(collection)) {
        if (Objects.nonNull(rowView.getColumn("dar_id", Integer.class))) {
          dar = rowView.getRow(DataAccessRequest.class);
          String referenceId = dar.getReferenceId();
          DataAccessRequest savedDar = collection.getDars().get(referenceId);
          if (Objects.isNull(savedDar)) {
            DataAccessRequestData data = translate(rowView.getColumn("data", String.class));
            dar.setData(data);
          } else {
            dar = savedDar;
          }
          if (Objects.nonNull(rowView.getColumn("dataset_id", Integer.class))) {
            dar.addDatasetId(rowView.getColumn("dataset_id", Integer.class));
          }
        }
        if (Objects.nonNull(rowView.getColumn("e_election_id", Integer.class))) {
          election = rowView.getRow(Election.class);
          Integer electionId = election.getElectionId();
          Election savedElection = dar.getElections().get(electionId);
          if (Objects.nonNull(savedElection)) {
            election = savedElection;
          }
        }
        if (Objects.nonNull(rowView.getColumn("v_vote_id", Integer.class))) {
          vote = rowView.getRow(Vote.class);
        }
        if (Objects.nonNull(rowView.getColumn("lc_id", Integer.class))) {
          libraryCard = rowView.getRow(LibraryCard.class);
        }
      }
    } catch (MappingException e) {
      // ignore any exceptions
    }
    if (Objects.nonNull(vote)) {
      election.addVote(vote);
    }

    if (Objects.nonNull(election)) {
      dar.addElection(election);
    }

    if (Objects.nonNull(dar)) {
      collection.addDar(dar);
    }

    if (Objects.nonNull(user)) {
      if (Objects.nonNull(institution)) {
        user.setInstitution(institution);
      }
      if (Objects.nonNull(libraryCard)) {
        user.addLibraryCard(libraryCard);
      }
      if (Objects.nonNull(userProperty)) {
        user.addProperty(userProperty);
      }
      collection.setCreateUser(user);
    }
  }
}

1	package org.broadinstitute.consent.http.db.mapper;
2
3	import java.util.Map;
4	import java.util.Objects;
5	import org.broadinstitute.consent.http.models.DarCollection;
6	import org.broadinstitute.consent.http.models.DataAccessRequest;
7	import org.broadinstitute.consent.http.models.DataAccessRequestData;
8	import org.broadinstitute.consent.http.models.Election;
9	import org.broadinstitute.consent.http.models.Institution;
10	import org.broadinstitute.consent.http.models.LibraryCard;
11	import org.broadinstitute.consent.http.models.User;
12	import org.broadinstitute.consent.http.models.UserProperty;
13	import org.broadinstitute.consent.http.models.Vote;
14	import org.jdbi.v3.core.mapper.MappingException;
15	import org.jdbi.v3.core.result.LinkedHashMapRowReducer;
16	import org.jdbi.v3.core.result.RowView;
17
18	public class DarCollectionReducer	1✔
19	implements LinkedHashMapRowReducer<Integer, DarCollection>, RowMapperHelper {
20
21	@Override
22	public void accumulate(Map<Integer, DarCollection> map, RowView rowView) {
23	DataAccessRequest dar = null;	1✔
24	Election election = null;	1✔
25	Vote vote = null;	1✔
26	User user = null;	1✔
27	UserProperty userProperty = null;	1✔
28	Institution institution = null;	1✔
29	LibraryCard libraryCard = null;	1✔
30	DarCollection collection =	1✔
31	map.computeIfAbsent(	1✔
32	rowView.getColumn("collection_id", Integer.class),	1✔
33	id -> rowView.getRow(DarCollection.class));	1✔
34	if (Objects.nonNull(collection) && Objects.nonNull(collection.getCreateUser())) {	1✔
35	user = collection.getCreateUser();	1✔
36	}
37	try {
38	if (Objects.nonNull(rowView.getColumn("up_property_id", Integer.class))) {	1✔
39	userProperty = rowView.getRow(UserProperty.class);	1✔
40	}
41	if (Objects.isNull(user) && Objects.nonNull(rowView.getColumn("u_user_id", Integer.class))) {	1✔
42	user = rowView.getRow(User.class);	1✔
43	}
44	if (Objects.nonNull(rowView.getColumn("i_id", Integer.class))) {	1✔
45	institution = rowView.getRow(Institution.class);	1✔
46	}
47	if (Objects.nonNull(collection)) {	1✔
48	if (Objects.nonNull(rowView.getColumn("dar_id", Integer.class))) {	1✔
49	dar = rowView.getRow(DataAccessRequest.class);	1✔
50	String referenceId = dar.getReferenceId();	1✔
51	DataAccessRequest savedDar = collection.getDars().get(referenceId);	1✔
52	if (Objects.isNull(savedDar)) {	1✔
53	DataAccessRequestData data = translate(rowView.getColumn("data", String.class));	1✔
54	dar.setData(data);	1✔
55	} else {	1✔
56	dar = savedDar;	×
57	}
58	if (Objects.nonNull(rowView.getColumn("dataset_id", Integer.class))) {	1✔
59	dar.addDatasetId(rowView.getColumn("dataset_id", Integer.class));	1✔
60	}
61	}
62	if (Objects.nonNull(rowView.getColumn("e_election_id", Integer.class))) {	1✔
63	election = rowView.getRow(Election.class);	1✔
64	Integer electionId = election.getElectionId();	1✔
65	Election savedElection = dar.getElections().get(electionId);	1✔
66	if (Objects.nonNull(savedElection)) {	1✔
67	election = savedElection;	×
68	}
69	}
70	if (Objects.nonNull(rowView.getColumn("v_vote_id", Integer.class))) {	1✔
71	vote = rowView.getRow(Vote.class);	1✔
72	}
73	if (Objects.nonNull(rowView.getColumn("lc_id", Integer.class))) {	1✔
74	libraryCard = rowView.getRow(LibraryCard.class);	1✔
75	}
76	}
77	} catch (MappingException e) {	1✔
78	// ignore any exceptions
79	}	1✔
80	if (Objects.nonNull(vote)) {	1✔
81	election.addVote(vote);	1✔
82	}
83
84	if (Objects.nonNull(election)) {	1✔
85	dar.addElection(election);	1✔
86	}
87
88	if (Objects.nonNull(dar)) {	1✔
89	collection.addDar(dar);	1✔
90	}
91
92	if (Objects.nonNull(user)) {	1✔
93	if (Objects.nonNull(institution)) {	1✔
94	user.setInstitution(institution);	1✔
95	}
96	if (Objects.nonNull(libraryCard)) {	1✔
97	user.addLibraryCard(libraryCard);	1✔
98	}
99	if (Objects.nonNull(userProperty)) {	1✔
100	user.addProperty(userProperty);	1✔
101	}
102	collection.setCreateUser(user);	1✔
103	}
104	}	1✔
105	}

DataBiosphere / consent / #5880

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