14456034071

Committed 14 Apr 2025 09:22PM UTC coverage: 13.068% (+0.008%) from 13.06%

Build # 14456034071

Build Type

push

github

Committed by

paulmthompson

Commit Message

fix changed function names

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210 of 1607 relevant lines covered (13.07%)

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4.29

/src/WhiskerToolbox/DataManager/DataManager.cpp


#include "DataManager.hpp"
#include "AnalogTimeSeries/Analog_Time_Series.hpp"
#include "DigitalTimeSeries/Digital_Event_Series.hpp"
#include "DigitalTimeSeries/Digital_Interval_Series.hpp"
#include "Lines/Line_Data.hpp"
#include "Masks/Mask_Data.hpp"
#include "Media/Video_Data.hpp"
#include "Points/Point_Data.hpp"
#include "Tensors/Tensor_Data.hpp"

#include "AnalogTimeSeries/Analog_Time_Series_Loader.hpp"
#include "DigitalTimeSeries/Digital_Event_Series_Loader.hpp"
#include "DigitalTimeSeries/Digital_Interval_Series_Loader.hpp"
#include "Masks/Mask_Data_Loader.hpp"
#include "Media/Video_Data_Loader.hpp"
#include "Points/Point_Data_Loader.hpp"

#include "loaders/binary_loaders.hpp"
#include "transforms/data_transforms.hpp"

#include "TimeFrame.hpp"

#include "nlohmann/json.hpp"
#include "utils/string_manip.hpp"

#include <filesystem>
#include <fstream>
#include <iostream>
#include <optional>
#include <regex>

using namespace nlohmann;

DataManager::DataManager() {
    _times["time"] = std::make_shared<TimeFrame>();
    _data["media"] = std::make_shared<MediaData>();

    setTimeFrame("media", "time");
    _output_path = std::filesystem::current_path();
}

void DataManager::setTimeFrame(std::string const & data_key, std::string const & time_key) {
    //Check that data_key is in _data
    if (_data.find(data_key) == _data.end()) {
        std::cerr << "Data key not found in DataManager: " << data_key << std::endl;
        return;
    }

    //Check that time_key is in _times
    if (_times.find(time_key) == _times.end()) {
        std::cerr << "Time key not found in DataManager: " << time_key << std::endl;
        return;
    }

    _time_frames[data_key] = time_key;
}

enum class DataType {
    Video,
    Points,
    Mask,
    Line,
    Analog,
    DigitalEvent,
    DigitalInterval,
    Tensor,
    Time,
    Unknown
};

DataType stringToDataType(std::string const & data_type_str) {
    if (data_type_str == "video") return DataType::Video;
    if (data_type_str == "points") return DataType::Points;
    if (data_type_str == "mask") return DataType::Mask;
    if (data_type_str == "line") return DataType::Line;
    if (data_type_str == "analog") return DataType::Analog;
    if (data_type_str == "digital_event") return DataType::DigitalEvent;
    if (data_type_str == "digital_interval") return DataType::DigitalInterval;
    if (data_type_str == "tensor") return DataType::Tensor;
    if (data_type_str == "time") return DataType::Time;
    return DataType::Unknown;
}

std::optional<std::string> processFilePath(
        std::string const & file_path,
        std::filesystem::path const & base_path) {
    std::filesystem::path full_path = file_path;

    // Check for wildcard character
    if (file_path.find('*') != std::string::npos) {
        // Convert wildcard pattern to regex
        std::string const pattern = std::regex_replace(full_path.string(), std::regex("\\*"), ".*");
        std::regex const regex_pattern(pattern);

        // Iterate through the directory to find matching files
        for (auto const & entry: std::filesystem::directory_iterator(base_path)) {
            std::cout << "Checking " << entry.path().string() << " with full path " << full_path << std::endl;
            if (std::regex_match(entry.path().string(), regex_pattern)) {
                std::cout << "Loading file " << entry.path().string() << std::endl;
                return entry.path().string();
            }
        }
        return std::nullopt;
    } else {
        // Check if the file path is relative
        if (!std::filesystem::path(file_path).is_absolute()) {
            full_path = base_path / file_path;
        }
        // Check for the presence of the file
        if (std::filesystem::exists(full_path)) {
            std::cout << "Loading file " << full_path.string() << std::endl;
            return full_path.string();
        } else {
            return std::nullopt;
        }
    }
}

bool checkRequiredFields(json const & item, std::vector<std::string> const & requiredFields) {
    for (auto const & field: requiredFields) {
        if (!item.contains(field)) {
            std::cerr << "Error: Missing required field \"" << field << "\" in JSON item." << std::endl;
            return false;
        }
    }
    return true;
}

int DataManager::addCallbackToData(std::string const & key, ObserverCallback callback) {

    int id = -1;

    if (_data.find(key) != _data.end()) {
        auto data = _data[key];

        id = std::visit([callback](auto & x) {
            return x.get()->addObserver(callback);
        },
                        data);
    }

    return id;
}

void DataManager::removeCallbackFromData(std::string const & key, int callback_id) {
    if (_data.find(key) != _data.end()) {
        auto data = _data[key];

        std::visit([callback_id](auto & x) {
            x.get()->removeObserver(callback_id);
        },
                   data);
    }
}

void checkOptionalFields(json const & item, std::vector<std::string> const & optionalFields) {
    for (auto const & field: optionalFields) {
        if (!item.contains(field)) {
            std::cout << "Warning: Optional field \"" << field << "\" is missing in JSON item." << std::endl;
        }
    }
}

std::vector<DataInfo> load_data_from_json_config(DataManager * dm, std::string const & json_filepath) {
    std::vector<DataInfo> data_info_list;
    // Open JSON file
    std::ifstream ifs(json_filepath);
    if (!ifs.is_open()) {
        std::cerr << "Failed to open JSON file: " << json_filepath << std::endl;
        return data_info_list;
    }

    // Parse JSON
    json j;
    ifs >> j;

    // get base path of filepath
    std::filesystem::path const base_path = std::filesystem::path(json_filepath).parent_path();

    // Iterate through JSON array
    for (auto const & item: j) {

        if (!checkRequiredFields(item, {"data_type", "name", "filepath"})) {
            continue;// Exit if any required field is missing
        }

        std::string const data_type_str = item["data_type"];
        DataType const data_type = stringToDataType(data_type_str);
        if (data_type == DataType::Unknown) {
            std::cout << "Unknown data type: " << data_type_str << std::endl;
            continue;
        }

        std::string const name = item["name"];

        auto file_exists = processFilePath(item["filepath"], base_path);
        if (!file_exists) {
            std::cerr << "File does not exist: " << item["filepath"] << std::endl;
            continue;
        }

        std::string const file_path = file_exists.value();

        switch (data_type) {
            case DataType::Video: {
                // Create VideoData object
                auto video_data = load_video_into_VideoData(file_path);

                // Add VideoData to DataManager
                dm->setMedia(video_data);

                data_info_list.push_back({name, "VideoData", ""});
                break;
            }
            case DataType::Points: {

                auto point_data = load_into_PointData(file_path, item);

                dm->setData<PointData>(name, point_data);

                std::string const color = item.value("color", "#0000FF");
                data_info_list.push_back({name, "PointData", color});
                break;
            }
            case DataType::Mask: {

                auto mask_data = load_into_MaskData(file_path, item);

                std::string const color = item.value("color", "0000FF");
                dm->setData<MaskData>(name, mask_data);

                data_info_list.push_back({name, "MaskData", color});

                if (item.contains("operations")) {

                    for (auto const & operation: item["operations"]) {

                        std::string const operation_type = operation["type"];

                        if (operation_type == "area") {
                            std::cout << "Calculating area for mask: " << name << std::endl;
                            auto area_data = area(dm->getData<MaskData>(name));
                            std::string const output_name = name + "_area";
                            dm->setData<AnalogTimeSeries>(output_name, area_data);
                        }
                    }
                }
                break;
            }
            case DataType::Line: {

                auto line_map = load_line_csv(file_path);

                //Get the whisker name from the filename using filesystem
                auto whisker_filename = std::filesystem::path(file_path).filename().string();

                //Remove .csv suffix from filename
                auto whisker_name = remove_extension(whisker_filename);

                dm->setData<LineData>(whisker_name, std::make_shared<LineData>(line_map));

                std::string const color = item.value("color", "0000FF");

                data_info_list.push_back({name, "LineData", color});

                break;
            }
            case DataType::Analog: {

                auto analog_time_series = load_into_AnalogTimeSeries(file_path, item);

                for (int channel = 0; channel < analog_time_series.size(); channel++) {
                    std::string const channel_name = name + "_" + std::to_string(channel);

                    dm->setData<AnalogTimeSeries>(channel_name, analog_time_series[channel]);

                    if (item.contains("clock")) {
                        std::string const clock = item["clock"];
                        dm->setTimeFrame(channel_name, clock);
                    }
                }
                break;
            }
            case DataType::DigitalEvent: {

                auto digital_event_series = load_into_DigitalEventSeries(file_path, item);

                for (int channel = 0; channel < digital_event_series.size(); channel++) {
                    std::string const channel_name = name + "_" + std::to_string(channel);

                    dm->setData<DigitalEventSeries>(channel_name, digital_event_series[channel]);

                    if (item.contains("clock")) {
                        std::string const clock = item["clock"];
                        dm->setTimeFrame(channel_name, clock);
                    }
                }
                break;
            }
            case DataType::DigitalInterval: {

                auto digital_interval_series = load_into_DigitalIntervalSeries(file_path, item);
                dm->setData<DigitalIntervalSeries>(name, digital_interval_series);

                break;
            }
            case DataType::Tensor: {

                if (item["format"] == "numpy") {

                    TensorData tensor_data;
                    loadNpyToTensorData(file_path, tensor_data);

                    dm->setData<TensorData>(name, std::make_shared<TensorData>(tensor_data));

                } else {
                    std::cout << "Format " << item["format"] << " not found for " << name << std::endl;
                }
                break;
            }
            case DataType::Time: {

                if (item["format"] == "uint16") {

                    int const channel = item["channel"];
                    std::string const transition = item["transition"];

                    int const header_size = item.value("header_size", 0);

                    auto opts = Loader::BinaryAnalogOptions{.file_path = file_path,
                                                            .header_size_bytes = static_cast<size_t>(header_size)};
                    auto data = readBinaryFile<uint16_t>(opts);

                    auto digital_data = Loader::extractDigitalData(data, channel);
                    auto events = Loader::extractEvents(digital_data, transition);

                    // convert to int with std::transform
                    std::vector<int> events_int;
                    events_int.reserve(events.size());
                    for (auto e: events) {
                        events_int.push_back(static_cast<int>(e));
                    }
                    std::cout << "Loaded " << events_int.size() << " events for " << name << std::endl;

                    auto timeframe = std::make_shared<TimeFrame>(events_int);
                    dm->setTime(name, timeframe);
                }

                if (item["format"] == "uint16_length") {

                    int const header_size = item.value("header_size", 0);

                    auto opts = Loader::BinaryAnalogOptions{.file_path = file_path,
                                                            .header_size_bytes = static_cast<size_t>(header_size)};
                    auto data = readBinaryFile<uint16_t>(opts);

                    std::vector<int> t(data.size());
                    std::iota(std::begin(t), std::end(t), 0);

                    std::cout << "Total of " << t.size() << " timestamps for " << name << std::endl;

                    auto timeframe = std::make_shared<TimeFrame>(t);
                    dm->setTime(name, timeframe);
                }
                break;
            }
            default:
                std::cout << "Unsupported data type: " << data_type_str << std::endl;
                continue;
        }
        if (item.contains("clock")) {
            std::string const clock = item["clock"];
            std::cout << "Setting time for " << name << " to " << clock << std::endl;
            dm->setTimeFrame(name, clock);
        }
    }

    return data_info_list;
}

std::string DataManager::getType(std::string const & key) const {
    auto it = _data.find(key);
    if (it != _data.end()) {
        if (std::holds_alternative<std::shared_ptr<MediaData>>(it->second)) {
            return "MediaData";
        } else if (std::holds_alternative<std::shared_ptr<PointData>>(it->second)) {
            return "PointData";
        } else if (std::holds_alternative<std::shared_ptr<LineData>>(it->second)) {
            return "LineData";
        } else if (std::holds_alternative<std::shared_ptr<MaskData>>(it->second)) {
            return "MaskData";
        } else if (std::holds_alternative<std::shared_ptr<AnalogTimeSeries>>(it->second)) {
            return "AnalogTimeSeries";
        } else if (std::holds_alternative<std::shared_ptr<DigitalEventSeries>>(it->second)) {
            return "DigitalEventSeries";
        } else if (std::holds_alternative<std::shared_ptr<DigitalIntervalSeries>>(it->second)) {
            return "DigitalIntervalSeries";
        } else if (std::holds_alternative<std::shared_ptr<TensorData>>(it->second)) {
            return "TensorData";
        }
        return "Unknown";
    }
}

1
2	#include "DataManager.hpp"
3	#include "AnalogTimeSeries/Analog_Time_Series.hpp"
4	#include "DigitalTimeSeries/Digital_Event_Series.hpp"
5	#include "DigitalTimeSeries/Digital_Interval_Series.hpp"
6	#include "Lines/Line_Data.hpp"
7	#include "Masks/Mask_Data.hpp"
8	#include "Media/Video_Data.hpp"
9	#include "Points/Point_Data.hpp"
10	#include "Tensors/Tensor_Data.hpp"
11
12	#include "AnalogTimeSeries/Analog_Time_Series_Loader.hpp"
13	#include "DigitalTimeSeries/Digital_Event_Series_Loader.hpp"
14	#include "DigitalTimeSeries/Digital_Interval_Series_Loader.hpp"
15	#include "Masks/Mask_Data_Loader.hpp"
16	#include "Media/Video_Data_Loader.hpp"
17	#include "Points/Point_Data_Loader.hpp"
18
19	#include "loaders/binary_loaders.hpp"
20	#include "transforms/data_transforms.hpp"
21
22	#include "TimeFrame.hpp"
23
24	#include "nlohmann/json.hpp"
25	#include "utils/string_manip.hpp"
26
27	#include <filesystem>
28	#include <fstream>
29	#include <iostream>
30	#include <optional>
31	#include <regex>
32
33	using namespace nlohmann;
34
35	DataManager::DataManager() {	2✔
36	_times["time"] = std::make_shared<TimeFrame>();	6✔
37	_data["media"] = std::make_shared<MediaData>();	6✔
38
39	setTimeFrame("media", "time");	10✔
40	_output_path = std::filesystem::current_path();	2✔
41	}	2✔
42
43	void DataManager::setTimeFrame(std::string const & data_key, std::string const & time_key) {	2✔
44	//Check that data_key is in _data
45	if (_data.find(data_key) == _data.end()) {	2✔
46	std::cerr << "Data key not found in DataManager: " << data_key << std::endl;	×
47	return;	×
48	}
49
50	//Check that time_key is in _times
51	if (_times.find(time_key) == _times.end()) {	2✔
52	std::cerr << "Time key not found in DataManager: " << time_key << std::endl;	×
53	return;	×
54	}
55
56	_time_frames[data_key] = time_key;	2✔
57	}
58
59	enum class DataType {
60	Video,
61	Points,
62	Mask,
63	Line,
64	Analog,
65	DigitalEvent,
66	DigitalInterval,
67	Tensor,
68	Time,
69	Unknown
70	};
71
72	DataType stringToDataType(std::string const & data_type_str) {	×
73	if (data_type_str == "video") return DataType::Video;	×
74	if (data_type_str == "points") return DataType::Points;	×
75	if (data_type_str == "mask") return DataType::Mask;	×
76	if (data_type_str == "line") return DataType::Line;	×
77	if (data_type_str == "analog") return DataType::Analog;	×
78	if (data_type_str == "digital_event") return DataType::DigitalEvent;	×
79	if (data_type_str == "digital_interval") return DataType::DigitalInterval;	×
80	if (data_type_str == "tensor") return DataType::Tensor;	×
81	if (data_type_str == "time") return DataType::Time;	×
82	return DataType::Unknown;	×
83	}
84
85	std::optional<std::string> processFilePath(	×
86	std::string const & file_path,
87	std::filesystem::path const & base_path) {
88	std::filesystem::path full_path = file_path;	×
89
90	// Check for wildcard character
91	if (file_path.find('*') != std::string::npos) {	×
92	// Convert wildcard pattern to regex
93	std::string const pattern = std::regex_replace(full_path.string(), std::regex("\\"), ".");	×
94	std::regex const regex_pattern(pattern);	×
95
96	// Iterate through the directory to find matching files
97	for (auto const & entry: std::filesystem::directory_iterator(base_path)) {	×
98	std::cout << "Checking " << entry.path().string() << " with full path " << full_path << std::endl;	×
99	if (std::regex_match(entry.path().string(), regex_pattern)) {	×
100	std::cout << "Loading file " << entry.path().string() << std::endl;	×
101	return entry.path().string();	×
102	}
103	}	×
104	return std::nullopt;	×
105	} else {	×
106	// Check if the file path is relative
107	if (!std::filesystem::path(file_path).is_absolute()) {	×
108	full_path = base_path / file_path;	×
109	}
110	// Check for the presence of the file
111	if (std::filesystem::exists(full_path)) {	×
112	std::cout << "Loading file " << full_path.string() << std::endl;	×
113	return full_path.string();	×
114	} else {
115	return std::nullopt;	×
116	}
117	}
118	}	×
119
120	bool checkRequiredFields(json const & item, std::vector<std::string> const & requiredFields) {	×
121	for (auto const & field: requiredFields) {	×
122	if (!item.contains(field)) {	×
123	std::cerr << "Error: Missing required field \"" << field << "\" in JSON item." << std::endl;	×
124	return false;	×
125	}
126	}
127	return true;	×
128	}
129
130	int DataManager::addCallbackToData(std::string const & key, ObserverCallback callback) {	×
131
132	int id = -1;	×
133
134	if (_data.find(key) != _data.end()) {	×
135	auto data = _data[key];	×
136
137	id = std::visit([callback](auto & x) {	×
138	return x.get()->addObserver(callback);	×
139	},
140	data);
141	}	×
142
143	return id;	×
144	}
145
146	void DataManager::removeCallbackFromData(std::string const & key, int callback_id) {	×
147	if (_data.find(key) != _data.end()) {	×
148	auto data = _data[key];	×
149
150	std::visit([callback_id](auto & x) {	×
151	x.get()->removeObserver(callback_id);	×
152	},	×
153	data);
154	}	×
155	}	×
156
157	void checkOptionalFields(json const & item, std::vector<std::string> const & optionalFields) {	×
158	for (auto const & field: optionalFields) {	×
159	if (!item.contains(field)) {	×
160	std::cout << "Warning: Optional field \"" << field << "\" is missing in JSON item." << std::endl;	×
161	}
162	}
163	}	×
164
165	std::vector<DataInfo> load_data_from_json_config(DataManager * dm, std::string const & json_filepath) {	×
166	std::vector<DataInfo> data_info_list;	×
167	// Open JSON file
168	std::ifstream ifs(json_filepath);	×
169	if (!ifs.is_open()) {	×
170	std::cerr << "Failed to open JSON file: " << json_filepath << std::endl;	×
171	return data_info_list;	×
172	}
173
174	// Parse JSON
175	json j;	×
176	ifs >> j;	×
177
178	// get base path of filepath
179	std::filesystem::path const base_path = std::filesystem::path(json_filepath).parent_path();	×
180
181	// Iterate through JSON array
182	for (auto const & item: j) {	×
183
184	if (!checkRequiredFields(item, {"data_type", "name", "filepath"})) {	×
185	continue;// Exit if any required field is missing	×
186	}
187
188	std::string const data_type_str = item["data_type"];	×
189	DataType const data_type = stringToDataType(data_type_str);	×
190	if (data_type == DataType::Unknown) {	×
191	std::cout << "Unknown data type: " << data_type_str << std::endl;	×
192	continue;	×
193	}
194
195	std::string const name = item["name"];	×
196
197	auto file_exists = processFilePath(item["filepath"], base_path);	×
198	if (!file_exists) {	×
199	std::cerr << "File does not exist: " << item["filepath"] << std::endl;	×
200	continue;	×
201	}
202
203	std::string const file_path = file_exists.value();	×
204
205	switch (data_type) {	×
206	case DataType::Video: {	×
207	// Create VideoData object
208	auto video_data = load_video_into_VideoData(file_path);	×
209
210	// Add VideoData to DataManager
211	dm->setMedia(video_data);	×
212
213	data_info_list.push_back({name, "VideoData", ""});	×
214	break;	×
215	}	×
216	case DataType::Points: {	×
217
218	auto point_data = load_into_PointData(file_path, item);	×
219
220	dm->setData<PointData>(name, point_data);	×
221
222	std::string const color = item.value("color", "#0000FF");	×
223	data_info_list.push_back({name, "PointData", color});	×
224	break;	×
225	}	×
226	case DataType::Mask: {	×
227
228	auto mask_data = load_into_MaskData(file_path, item);	×
229
230	std::string const color = item.value("color", "0000FF");	×
231	dm->setData<MaskData>(name, mask_data);	×
232
233	data_info_list.push_back({name, "MaskData", color});	×
234
235	if (item.contains("operations")) {	×
236
237	for (auto const & operation: item["operations"]) {	×
238
239	std::string const operation_type = operation["type"];	×
240
241	if (operation_type == "area") {	×
242	std::cout << "Calculating area for mask: " << name << std::endl;	×
243	auto area_data = area(dm->getData<MaskData>(name));	×
244	std::string const output_name = name + "_area";	×
245	dm->setData<AnalogTimeSeries>(output_name, area_data);	×
246	}	×
247	}	×
248	}
249	break;	×
250	}	×
251	case DataType::Line: {	×
252
253	auto line_map = load_line_csv(file_path);	×
254
255	//Get the whisker name from the filename using filesystem
256	auto whisker_filename = std::filesystem::path(file_path).filename().string();	×
257
258	//Remove .csv suffix from filename
259	auto whisker_name = remove_extension(whisker_filename);	×
260
261	dm->setData<LineData>(whisker_name, std::make_shared<LineData>(line_map));	×
262
263	std::string const color = item.value("color", "0000FF");	×
264
265	data_info_list.push_back({name, "LineData", color});	×
266
267	break;	×
268	}	×
269	case DataType::Analog: {	×
270
271	auto analog_time_series = load_into_AnalogTimeSeries(file_path, item);	×
272
273	for (int channel = 0; channel < analog_time_series.size(); channel++) {	×
274	std::string const channel_name = name + "_" + std::to_string(channel);	×
275
276	dm->setData<AnalogTimeSeries>(channel_name, analog_time_series[channel]);	×
277
278	if (item.contains("clock")) {	×
279	std::string const clock = item["clock"];	×
280	dm->setTimeFrame(channel_name, clock);	×
281	}	×
282	}	×
283	break;	×
284	}	×
285	case DataType::DigitalEvent: {	×
286
287	auto digital_event_series = load_into_DigitalEventSeries(file_path, item);	×
288
289	for (int channel = 0; channel < digital_event_series.size(); channel++) {	×
290	std::string const channel_name = name + "_" + std::to_string(channel);	×
291
292	dm->setData<DigitalEventSeries>(channel_name, digital_event_series[channel]);	×
293
294	if (item.contains("clock")) {	×
295	std::string const clock = item["clock"];	×
296	dm->setTimeFrame(channel_name, clock);	×
297	}	×
298	}	×
299	break;	×
300	}	×
301	case DataType::DigitalInterval: {	×
302
303	auto digital_interval_series = load_into_DigitalIntervalSeries(file_path, item);	×
304	dm->setData<DigitalIntervalSeries>(name, digital_interval_series);	×
305
306	break;	×
307	}	×
308	case DataType::Tensor: {	×
309
310	if (item["format"] == "numpy") {	×
311
312	TensorData tensor_data;	×
313	loadNpyToTensorData(file_path, tensor_data);	×
314
315	dm->setData<TensorData>(name, std::make_shared<TensorData>(tensor_data));	×
316
317	} else {	×
318	std::cout << "Format " << item["format"] << " not found for " << name << std::endl;	×
319	}
320	break;	×
321	}
322	case DataType::Time: {	×
323
324	if (item["format"] == "uint16") {	×
325
326	int const channel = item["channel"];	×
327	std::string const transition = item["transition"];	×
328
329	int const header_size = item.value("header_size", 0);	×
330
331	auto opts = Loader::BinaryAnalogOptions{.file_path = file_path,	×
332	.header_size_bytes = static_cast<size_t>(header_size)};	×
333	auto data = readBinaryFile<uint16_t>(opts);	×
334
335	auto digital_data = Loader::extractDigitalData(data, channel);	×
336	auto events = Loader::extractEvents(digital_data, transition);	×
337
338	// convert to int with std::transform
339	std::vector<int> events_int;	×
340	events_int.reserve(events.size());	×
341	for (auto e: events) {	×
342	events_int.push_back(static_cast<int>(e));	×
343	}
344	std::cout << "Loaded " << events_int.size() << " events for " << name << std::endl;	×
345
346	auto timeframe = std::make_shared<TimeFrame>(events_int);	×
347	dm->setTime(name, timeframe);	×
348	}	×
349
350	if (item["format"] == "uint16_length") {	×
351
352	int const header_size = item.value("header_size", 0);	×
353
354	auto opts = Loader::BinaryAnalogOptions{.file_path = file_path,	×
355	.header_size_bytes = static_cast<size_t>(header_size)};	×
356	auto data = readBinaryFile<uint16_t>(opts);	×
357
358	std::vector<int> t(data.size());	×
359	std::iota(std::begin(t), std::end(t), 0);	×
360
361	std::cout << "Total of " << t.size() << " timestamps for " << name << std::endl;	×
362
363	auto timeframe = std::make_shared<TimeFrame>(t);	×
364	dm->setTime(name, timeframe);	×
365	}	×
366	break;	×
367	}
368	default:	×
369	std::cout << "Unsupported data type: " << data_type_str << std::endl;	×
370	continue;	×
371	}	×
372	if (item.contains("clock")) {	×
373	std::string const clock = item["clock"];	×
374	std::cout << "Setting time for " << name << " to " << clock << std::endl;	×
375	dm->setTimeFrame(name, clock);	×
376	}	×
377	}	×
378
379	return data_info_list;
380	}	×
381
382	std::string DataManager::getType(std::string const & key) const {	×
383	auto it = _data.find(key);	×
384	if (it != _data.end()) {	×
385	if (std::holds_alternative<std::shared_ptr<MediaData>>(it->second)) {	×
386	return "MediaData";	×
387	} else if (std::holds_alternative<std::shared_ptr<PointData>>(it->second)) {	×
388	return "PointData";	×
389	} else if (std::holds_alternative<std::shared_ptr<LineData>>(it->second)) {	×
390	return "LineData";	×
391	} else if (std::holds_alternative<std::shared_ptr<MaskData>>(it->second)) {	×
392	return "MaskData";	×
393	} else if (std::holds_alternative<std::shared_ptr<AnalogTimeSeries>>(it->second)) {	×
394	return "AnalogTimeSeries";	×
395	} else if (std::holds_alternative<std::shared_ptr<DigitalEventSeries>>(it->second)) {	×
396	return "DigitalEventSeries";	×
397	} else if (std::holds_alternative<std::shared_ptr<DigitalIntervalSeries>>(it->second)) {	×
398	return "DigitalIntervalSeries";	×
399	} else if (std::holds_alternative<std::shared_ptr<TensorData>>(it->second)) {	×
400	return "TensorData";	×
401	}
402	return "Unknown";	×
403	}
404	}

paulmthompson / WhiskerToolbox / 14456034071

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