#352

Committed 07 Apr 2025 10:22AM UTC coverage: 59.538% (-0.6%) from 60.167%

Build # #352

Build Type

Pull #193

github

Committed by

web-flow

Commit Message

Merge d636f9333 into 46536cad2

Pull Request Pull Request #193: Add accessor for the extension field.

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/src/main/java/org/w3id/cwl/cwl1_2/OutputRecordFieldImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.w3id.cwl.cwl1_2;

import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
import org.w3id.cwl.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#OutputRecordField</I><BR>
 */
public class OutputRecordFieldImpl extends SaveableImpl implements OutputRecordField {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private String name;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#RecordField/name</I><BR>
   * <BLOCKQUOTE>
   * The name of the field
   *    * </BLOCKQUOTE>
   */

  public String getName() {
    return this.name;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private Object type;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
   * <BLOCKQUOTE>
   * The field type
   *    * </BLOCKQUOTE>
   */

  public Object getType() {
    return this.type;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object secondaryFiles;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * Provides a pattern or expression specifying files or
   * directories that should be included alongside the primary
   * file.  Secondary files may be required or optional.  When not
   * explicitly specified, secondary files specified for `inputs`
   * are required and `outputs` are optional.  An implementation
   * must include matching Files and Directories in the
   * `secondaryFiles` property of the primary file.  These Files
   * and Directories must be transferred and staged alongside the
   * primary file.  An implementation may fail workflow execution
   * if a required secondary file does not exist.
   * 
   * If the value is an expression, the value of `self` in the expression
   * must be the primary input or output File object to which this binding
   * applies.  The `basename`, `nameroot` and `nameext` fields must be
   * present in `self`.  For `CommandLineTool` outputs the `path` field must
   * also be present.  The expression must return a filename string relative
   * to the path to the primary File, a File or Directory object with either
   * `path` or `location` and `basename` fields set, or an array consisting
   * of strings or File or Directory objects.  It is legal to reference an
   * unchanged File or Directory object taken from input as a secondaryFile.
   * The expression may return "null" in which case there is no secondaryFile
   * from that expression.
   * 
   * To work on non-filename-preserving storage systems, portable tool
   * descriptions should avoid constructing new values from `location`, but
   * should construct relative references using `basename` or `nameroot`
   * instead.
   * 
   * If a value in `secondaryFiles` is a string that is not an expression,
   * it specifies that the following pattern should be applied to the path
   * of the primary file to yield a filename relative to the primary File:
   * 
   *   1. If string ends with `?` character, remove the last `?` and mark
   *     the resulting secondary file as optional.
   *   2. If string begins with one or more caret `^` characters, for each
   *     caret, remove the last file extension from the path (the last
   *     period `.` and all following characters).  If there are no file
   *     extensions, the path is unchanged.
   *   3. Append the remainder of the string to the end of the file path.
   *    * </BLOCKQUOTE>
   */

  public Object getSecondaryFiles() {
    return this.secondaryFiles;
  }

  private java.util.Optional<Boolean> streamable;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * A value of `true` indicates that the file is read or written
   * sequentially without seeking.  An implementation may use this flag to
   * indicate whether it is valid to stream file contents using a named
   * pipe.  Default: `false`.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getStreamable() {
    return this.streamable;
  }

  private Object format;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * This is the file format that will be assigned to the output
   * File object.
   *    * </BLOCKQUOTE>
   */

  public Object getFormat() {
    return this.format;
  }

  /**
   * Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of OutputRecordFieldImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public OutputRecordFieldImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("OutputRecordFieldImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    String name;

    if (__doc.containsKey("name")) {
      try {
        name =
            LoaderInstances
                .uri_StringInstance_True_False_None_None
                .loadField(__doc.get("name"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        name = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `name` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      name = null;
    }

    if (name == null) {
      if (__docRoot != null) {
        name = __docRoot;
      } else {
        throw new ValidationException("Missing name");
      }
    }
    __baseUri = (String) name;
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    Object type;
    try {
      type =
          LoaderInstances
              .typedsl_union_of_CWLType_or_OutputRecordSchema_or_OutputEnumSchema_or_OutputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_OutputRecordSchema_or_OutputEnumSchema_or_OutputArraySchema_or_StringInstance_2
              .loadField(__doc.get("type"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      type = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `type` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object secondaryFiles;

    if (__doc.containsKey("secondaryFiles")) {
      try {
        secondaryFiles =
            LoaderInstances
                .secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
                .loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        secondaryFiles = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `secondaryFiles` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      secondaryFiles = null;
    }
    java.util.Optional<Boolean> streamable;

    if (__doc.containsKey("streamable")) {
      try {
        streamable =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("streamable"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        streamable = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `streamable` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      streamable = null;
    }
    Object format;

    if (__doc.containsKey("format")) {
      try {
        format =
            LoaderInstances
                .uri_union_of_NullInstance_or_StringInstance_or_ExpressionLoader_True_False_None_True
                .loadField(__doc.get("format"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        format = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `format` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      format = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.doc = (Object) doc;
    this.name = (String) name;
    this.type = (Object) type;
    this.label = (java.util.Optional<String>) label;
    this.secondaryFiles = (Object) secondaryFiles;
    this.streamable = (java.util.Optional<Boolean>) streamable;
    this.format = (Object) format;
  }
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.w3id.cwl.cwl1_2;
16
17	import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
18	import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
19	import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
21	import org.w3id.cwl.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#OutputRecordField</I><BR>
25	*/
26	public class OutputRecordFieldImpl extends SaveableImpl implements OutputRecordField {
27	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
28	private java.util.Map<String, Object> extensionFields_ =	1✔
29	new java.util.HashMap<String, Object>();
30	public java.util.Map<String, Object> getExtensionFields() {
NEW 31	return this.extensionFields_;	×
32	}
33
34	private String name;
35
36	/**
37	* Getter for property <I>https://w3id.org/cwl/salad#RecordField/name</I><BR>
38	* <BLOCKQUOTE>
39	* The name of the field
40	* * </BLOCKQUOTE>
41	*/
42
43	public String getName() {
44	return this.name;	×
45	}
46
47	private Object doc;
48
49	/**
50	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
51	* <BLOCKQUOTE>
52	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
53	*/
54
55	public Object getDoc() {
56	return this.doc;	×
57	}
58
59	private Object type;
60
61	/**
62	* Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
63	* <BLOCKQUOTE>
64	* The field type
65	* * </BLOCKQUOTE>
66	*/
67
68	public Object getType() {
69	return this.type;	×
70	}
71
72	private java.util.Optional<String> label;
73
74	/**
75	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
76	* <BLOCKQUOTE>
77	* A short, human-readable label of this object. * </BLOCKQUOTE>
78	*/
79
80	public java.util.Optional<String> getLabel() {
81	return this.label;	×
82	}
83
84	private Object secondaryFiles;
85
86	/**
87	* Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
88	* <BLOCKQUOTE>
89	* Only valid when `type: File` or is an array of `items: File`.
90	*
91	* Provides a pattern or expression specifying files or
92	* directories that should be included alongside the primary
93	* file. Secondary files may be required or optional. When not
94	* explicitly specified, secondary files specified for `inputs`
95	* are required and `outputs` are optional. An implementation
96	* must include matching Files and Directories in the
97	* `secondaryFiles` property of the primary file. These Files
98	* and Directories must be transferred and staged alongside the
99	* primary file. An implementation may fail workflow execution
100	* if a required secondary file does not exist.
101	*
102	* If the value is an expression, the value of `self` in the expression
103	* must be the primary input or output File object to which this binding
104	* applies. The `basename`, `nameroot` and `nameext` fields must be
105	* present in `self`. For `CommandLineTool` outputs the `path` field must
106	* also be present. The expression must return a filename string relative
107	* to the path to the primary File, a File or Directory object with either
108	* `path` or `location` and `basename` fields set, or an array consisting
109	* of strings or File or Directory objects. It is legal to reference an
110	* unchanged File or Directory object taken from input as a secondaryFile.
111	* The expression may return "null" in which case there is no secondaryFile
112	* from that expression.
113	*
114	* To work on non-filename-preserving storage systems, portable tool
115	* descriptions should avoid constructing new values from `location`, but
116	* should construct relative references using `basename` or `nameroot`
117	* instead.
118	*
119	* If a value in `secondaryFiles` is a string that is not an expression,
120	* it specifies that the following pattern should be applied to the path
121	* of the primary file to yield a filename relative to the primary File:
122	*
123	* 1. If string ends with `?` character, remove the last `?` and mark
124	* the resulting secondary file as optional.
125	* 2. If string begins with one or more caret `^` characters, for each
126	* caret, remove the last file extension from the path (the last
127	* period `.` and all following characters). If there are no file
128	* extensions, the path is unchanged.
129	* 3. Append the remainder of the string to the end of the file path.
130	* * </BLOCKQUOTE>
131	*/
132
133	public Object getSecondaryFiles() {
134	return this.secondaryFiles;	×
135	}
136
137	private java.util.Optional<Boolean> streamable;
138
139	/**
140	* Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
141	* <BLOCKQUOTE>
142	* Only valid when `type: File` or is an array of `items: File`.
143	*
144	* A value of `true` indicates that the file is read or written
145	* sequentially without seeking. An implementation may use this flag to
146	* indicate whether it is valid to stream file contents using a named
147	* pipe. Default: `false`.
148	* * </BLOCKQUOTE>
149	*/
150
151	public java.util.Optional<Boolean> getStreamable() {
152	return this.streamable;	×
153	}
154
155	private Object format;
156
157	/**
158	* Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
159	* <BLOCKQUOTE>
160	* Only valid when `type: File` or is an array of `items: File`.
161	*
162	* This is the file format that will be assigned to the output
163	* File object.
164	* * </BLOCKQUOTE>
165	*/
166
167	public Object getFormat() {
168	return this.format;	×
169	}
170
171	/**
172	* Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of OutputRecordFieldImpl.
173	*
174	* @param __doc_ Document fragment to load this record object from (presumably a
175	{@link java.util.Map}).
176	* @param __baseUri_ Base URI to generate child document IDs against.
177	* @param __loadingOptions Context for loading URIs and populating objects.
178	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
179	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
180	* or validation of fields fails.
181	*/
182	public OutputRecordFieldImpl(
183	final Object __doc_,
184	final String __baseUri_,
185	LoadingOptions __loadingOptions,
186	final String __docRoot_) {
187	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
188	// Prefix plumbing variables with '__' to reduce likelihood of collision with
189	// generated names.
190	String __baseUri = __baseUri_;	1✔
191	String __docRoot = __docRoot_;	1✔
192	if (!(__doc_ instanceof java.util.Map)) {	1✔
193	throw new ValidationException("OutputRecordFieldImpl called on non-map");	×
194	}
195	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
196	final java.util.List<ValidationException> __errors =	1✔
197	new java.util.ArrayList<ValidationException>();
198	if (__loadingOptions != null) {	1✔
199	this.loadingOptions_ = __loadingOptions;	1✔
200	}
201	String name;
202
203	if (__doc.containsKey("name")) {	1✔
204	try {
205	name =	1✔
206	LoaderInstances
207	.uri_StringInstance_True_False_None_None
208	.loadField(__doc.get("name"), __baseUri, __loadingOptions);	1✔
209	} catch (ValidationException e) {	×
210	name = null; // won't be used but prevents compiler from complaining.	×
211	final String __message = "the `name` field is not valid because:";	×
212	__errors.add(new ValidationException(__message, e));	×
213	}	1✔
214
215	} else {
216	name = null;	×
217	}
218
219	if (name == null) {	1✔
220	if (__docRoot != null) {	×
221	name = __docRoot;	×
222	} else {
223	throw new ValidationException("Missing name");	×
224	}
225	}
226	__baseUri = (String) name;	1✔
227	Object doc;
228
229	if (__doc.containsKey("doc")) {	1✔
230	try {
231	doc =	×
232	LoaderInstances
233	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
234	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	×
235	} catch (ValidationException e) {	×
236	doc = null; // won't be used but prevents compiler from complaining.	×
237	final String __message = "the `doc` field is not valid because:";	×
238	__errors.add(new ValidationException(__message, e));	×
239	}	×
240
241	} else {
242	doc = null;	1✔
243	}
244	Object type;
245	try {
246	type =	1✔
247	LoaderInstances
248	.typedsl_union_of_CWLType_or_OutputRecordSchema_or_OutputEnumSchema_or_OutputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_OutputRecordSchema_or_OutputEnumSchema_or_OutputArraySchema_or_StringInstance_2
249	.loadField(__doc.get("type"), __baseUri, __loadingOptions);	1✔
250	} catch (ValidationException e) {	×
251	type = null; // won't be used but prevents compiler from complaining.	×
252	final String __message = "the `type` field is not valid because:";	×
253	__errors.add(new ValidationException(__message, e));	×
254	}	1✔
255	java.util.Optional<String> label;
256
257	if (__doc.containsKey("label")) {	1✔
258	try {
259	label =	×
260	LoaderInstances
261	.optional_StringInstance
262	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
263	} catch (ValidationException e) {	×
264	label = null; // won't be used but prevents compiler from complaining.	×
265	final String __message = "the `label` field is not valid because:";	×
266	__errors.add(new ValidationException(__message, e));	×
267	}	×
268
269	} else {
270	label = null;	1✔
271	}
272	Object secondaryFiles;
273
274	if (__doc.containsKey("secondaryFiles")) {	1✔
275	try {
276	secondaryFiles =	×
277	LoaderInstances
278	.secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
279	.loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);	×
280	} catch (ValidationException e) {	×
281	secondaryFiles = null; // won't be used but prevents compiler from complaining.	×
282	final String __message = "the `secondaryFiles` field is not valid because:";	×
283	__errors.add(new ValidationException(__message, e));	×
284	}	×
285
286	} else {
287	secondaryFiles = null;	1✔
288	}
289	java.util.Optional<Boolean> streamable;
290
291	if (__doc.containsKey("streamable")) {	1✔
292	try {
293	streamable =	×
294	LoaderInstances
295	.optional_BooleanInstance
296	.loadField(__doc.get("streamable"), __baseUri, __loadingOptions);	×
297	} catch (ValidationException e) {	×
298	streamable = null; // won't be used but prevents compiler from complaining.	×
299	final String __message = "the `streamable` field is not valid because:";	×
300	__errors.add(new ValidationException(__message, e));	×
301	}	×
302
303	} else {
304	streamable = null;	1✔
305	}
306	Object format;
307
308	if (__doc.containsKey("format")) {	1✔
309	try {
310	format =	×
311	LoaderInstances
312	.uri_union_of_NullInstance_or_StringInstance_or_ExpressionLoader_True_False_None_True
313	.loadField(__doc.get("format"), __baseUri, __loadingOptions);	×
314	} catch (ValidationException e) {	×
315	format = null; // won't be used but prevents compiler from complaining.	×
316	final String __message = "the `format` field is not valid because:";	×
317	__errors.add(new ValidationException(__message, e));	×
318	}	×
319
320	} else {
321	format = null;	1✔
322	}
323	if (!__errors.isEmpty()) {	1✔
324	throw new ValidationException("Trying 'RecordField'", __errors);	×
325	}
326	this.doc = (Object) doc;	1✔
327	this.name = (String) name;	1✔
328	this.type = (Object) type;	1✔
329	this.label = (java.util.Optional<String>) label;	1✔
330	this.secondaryFiles = (Object) secondaryFiles;	1✔
331	this.streamable = (java.util.Optional<Boolean>) streamable;	1✔
332	this.format = (Object) format;	1✔
333	}	1✔
334	}

common-workflow-language / cwljava / #352

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