14225235949

Committed 02 Apr 2025 04:56PM UTC coverage: 90.508% (+0.5%) from 90.054%

Build # 14225235949

Build Type

push

github

Committed by

veghp

Commit Message

Bump to v3.2.14

Run Details

1 of 1 new or added line in 1 file covered. (100.0%)

101 existing lines in 35 files now uncovered.

2994 of 3308 relevant lines covered (90.51%)

0.91 hits per line

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94.44

/dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py

from .SpecEvaluation import SpecEvaluation
from .SpecEvaluations import SpecEvaluations


class ProblemConstraintsEvaluations(SpecEvaluations):
    """Special multi-evaluation class for all constraints of a same problem.

    See submethod ``.from_problem``

    """

    specifications_role = "constraint"

    @staticmethod
    def from_problem(problem, autopass_constraints=True):
        """Create an instance by evaluating all constraints in the problem.

        The ``problem`` is a DnaChisel DnaOptimizationProblem.

        """

        def evaluate(constraint):
            if autopass_constraints and constraint.enforced_by_nucleotide_restrictions:
                return SpecEvaluation(
                    constraint,
                    problem,
                    score=1,
                    locations=[],
                    message="Enforced by nucleotides restrictions",
                )
            else:
                return constraint.evaluate(problem)

        return ProblemConstraintsEvaluations(
            [evaluate(constraint) for constraint in problem.constraints],
            problem=problem,
        )

    def success_failure_color(self, evaluation):
        """Return color #60f979 if evaluation.passes else #f96c60."""
        return "#60f979" if evaluation.passes else "#f96c60"

    def text_summary_message(self):
        """Return a global SUCCESS or FAILURE message for all evaluations."""
        failed = [e for e in self.evaluations if not e.passes]
        if failed == []:
            return "SUCCESS - all constraints evaluations pass"
        else:
            return "FAILURE: %d constraints evaluations failed" % len(failed)

1	from .SpecEvaluation import SpecEvaluation	1✔
2	from .SpecEvaluations import SpecEvaluations	1✔
3
4
5	class ProblemConstraintsEvaluations(SpecEvaluations):	1✔
6	"""Special multi-evaluation class for all constraints of a same problem.
7
8	See submethod ``.from_problem``
9
10	"""
11
12	specifications_role = "constraint"	1✔
13
14	@staticmethod	1✔
15	def from_problem(problem, autopass_constraints=True):	1✔
16	"""Create an instance by evaluating all constraints in the problem.
17
18	The ``problem`` is a DnaChisel DnaOptimizationProblem.
19
20	"""
21
22	def evaluate(constraint):	1✔
23	if autopass_constraints and constraint.enforced_by_nucleotide_restrictions:	1✔
24	return SpecEvaluation(	1✔
25	constraint,
26	problem,
27	score=1,
28	locations=[],
29	message="Enforced by nucleotides restrictions",
30	)
31	else:
32	return constraint.evaluate(problem)	1✔
33
34	return ProblemConstraintsEvaluations(	1✔
35	[evaluate(constraint) for constraint in problem.constraints],
36	problem=problem,
37	)
38
39	def success_failure_color(self, evaluation):	1✔
40	"""Return color #60f979 if evaluation.passes else #f96c60."""
41	return "#60f979" if evaluation.passes else "#f96c60"	1✔
42
43	def text_summary_message(self):	1✔
44	"""Return a global SUCCESS or FAILURE message for all evaluations."""
45	failed = [e for e in self.evaluations if not e.passes]	1✔
46	if failed == []:	1✔
UNCOV 47	return "SUCCESS - all constraints evaluations pass"	×
48	else:
49	return "FAILURE: %d constraints evaluations failed" % len(failed)	1✔

Edinburgh-Genome-Foundry / DnaChisel / 14225235949

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