biocore / mg-scripts / 13710030712

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fixes after deploy 03.25 (#169)

* Production hotfixes

* All tests are working

* Folded in MultiQCJob breakout PR (162)

* New files added

* Tests updated

* MultiQCJob updated

* Update sequence_processing_pipeline/MultiQCJob.py

Co-authored-by: Daniel McDonald <damcdonald@ucsd.edu>

* Update sequence_processing_pipeline/MultiQCJob.py

Co-authored-by: Daniel McDonald <damcdonald@ucsd.edu>

* Update sequence_processing_pipeline/MultiQCJob.py

Co-authored-by: Daniel McDonald <damcdonald@ucsd.edu>

* Updates based on feedback.

* Updates based on feedback

* Updates based on feedback

* address @wasade offset comment

* fixes after deploy 03.25

* self.commands -> self.array_cmds

* forgotten change

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Co-authored-by: Charles Cowart <ccowart@ucsd.edu>
Co-authored-by: Charles Cowart <42684307+charles-cowart@users.noreply.github.com>
Co-authored-by: Daniel McDonald <damcdonald@ucsd.edu>

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