13257409288

Committed 11 Feb 2025 06:51AM UTC coverage: 95.592% (-0.1%) from 95.735%

Build # 13257409288

Build Type

Pull #565

github

Committed by

web-flow

Commit Message

Merge ebd267ae8 into 659d0ded2

Pull Request Pull Request #565: [feature] Add option to specify number of nodes

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91.38

/executorlib/interfaces/flux.py

from typing import Callable, Optional, Union

from executorlib.interactive.executor import ExecutorWithDependencies
from executorlib.interactive.shared import (
    InteractiveExecutor,
    InteractiveStepExecutor,
)
from executorlib.standalone.inputcheck import (
    check_command_line_argument_lst,
    check_init_function,
    check_oversubscribe,
    check_plot_dependency_graph,
    check_pmi,
    check_refresh_rate,
    validate_number_of_cores,
)

try:  # The PyFluxExecutor requires flux-base to be installed.
    from executorlib.interactive.flux import FluxPythonSpawner
    from executorlib.interactive.flux import (
        validate_max_workers as validate_max_workers_flux,
    )
except ImportError:
    pass


class FluxJobExecutor:
    """
    The executorlib.Executor leverages either the message passing interface (MPI), the SLURM workload manager or
    preferable the flux framework for distributing python functions within a given resource allocation. In contrast to
    the mpi4py.futures.MPIPoolExecutor the executorlib.Executor can be executed in a serial python process and does not
    require the python script to be executed with MPI. It is even possible to execute the executorlib.Executor directly
    in an interactive Jupyter notebook.

    Args:
        max_workers (int): for backwards compatibility with the standard library, max_workers also defines the number of
                           cores which can be used in parallel - just like the max_cores parameter. Using max_cores is
                           recommended, as computers have a limited number of compute cores.
        cache_directory (str, optional): The directory to store cache files. Defaults to "cache".
        max_cores (int): defines the number cores which can be used in parallel
        resource_dict (dict): A dictionary of resources required by the task. With the following keys:
                              - cores (int): number of MPI cores to be used for each function call
                              - threads_per_core (int): number of OpenMP threads to be used for each function call
                              - gpus_per_core (int): number of GPUs per worker - defaults to 0
                              - cwd (str/None): current working directory where the parallel python task is executed
                              - openmpi_oversubscribe (bool): adds the `--oversubscribe` command line flag (OpenMPI and
                                                              SLURM only) - default False
                              - slurm_cmd_args (list): Additional command line arguments for the srun call (SLURM only)
        flux_executor (flux.job.FluxExecutor): Flux Python interface to submit the workers to flux
        flux_executor_pmi_mode (str): PMI interface to use (OpenMPI v5 requires pmix) default is None (Flux only)
        flux_executor_nesting (bool): Provide hierarchically nested Flux job scheduler inside the submitted function.
        flux_log_files (bool, optional): Write flux stdout and stderr files. Defaults to False.
        hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an
                                      Executor running on a different compute node within the same allocation. And
                                      in principle any computer should be able to resolve that their own hostname
                                      points to the same address as localhost. Still MacOS >= 12 seems to disable
                                      this look up for security reasons. So on MacOS it is required to set this
                                      option to true
        block_allocation (boolean): To accelerate the submission of a series of python functions with the same resource
                                    requirements, executorlib supports block allocation. In this case all resources have
                                    to be defined on the executor, rather than during the submission of the individual
                                    function.
        init_function (None): optional function to preset arguments for functions which are submitted later
        disable_dependencies (boolean): Disable resolving future objects during the submission.
        refresh_rate (float): Set the refresh rate in seconds, how frequently the input queue is checked.
        plot_dependency_graph (bool): Plot the dependencies of multiple future objects without executing them. For
                                      debugging purposes and to get an overview of the specified dependencies.
        plot_dependency_graph_filename (str): Name of the file to store the plotted graph in.

    Examples:
        ```
        >>> import numpy as np
        >>> from executorlib.interfaces.flux import FluxJobExecutor
        >>>
        >>> def calc(i, j, k):
        >>>     from mpi4py import MPI
        >>>     size = MPI.COMM_WORLD.Get_size()
        >>>     rank = MPI.COMM_WORLD.Get_rank()
        >>>     return np.array([i, j, k]), size, rank
        >>>
        >>> def init_k():
        >>>     return {"k": 3}
        >>>
        >>> with FluxJobExecutor(max_workers=2, init_function=init_k) as p:
        >>>     fs = p.submit(calc, 2, j=4)
        >>>     print(fs.result())
        [(array([2, 4, 3]), 2, 0), (array([2, 4, 3]), 2, 1)]
        ```
    """

    def __init__(
        self,
        max_workers: Optional[int] = None,
        cache_directory: Optional[str] = None,
        max_cores: Optional[int] = None,
        resource_dict: Optional[dict] = None,
        flux_executor=None,
        flux_executor_pmi_mode: Optional[str] = None,
        flux_executor_nesting: bool = False,
        flux_log_files: bool = False,
        hostname_localhost: Optional[bool] = None,
        block_allocation: bool = False,
        init_function: Optional[Callable] = None,
        disable_dependencies: bool = False,
        refresh_rate: float = 0.01,
        plot_dependency_graph: bool = False,
        plot_dependency_graph_filename: Optional[str] = None,
    ):
        # Use __new__() instead of __init__(). This function is only implemented to enable auto-completion.
        pass

    def __new__(
        cls,
        max_workers: Optional[int] = None,
        cache_directory: Optional[str] = None,
        max_cores: Optional[int] = None,
        resource_dict: Optional[dict] = None,
        flux_executor=None,
        flux_executor_pmi_mode: Optional[str] = None,
        flux_executor_nesting: bool = False,
        flux_log_files: bool = False,
        hostname_localhost: Optional[bool] = None,
        block_allocation: bool = False,
        init_function: Optional[Callable] = None,
        disable_dependencies: bool = False,
        refresh_rate: float = 0.01,
        plot_dependency_graph: bool = False,
        plot_dependency_graph_filename: Optional[str] = None,
    ):
        """
        Instead of returning a executorlib.Executor object this function returns either a executorlib.mpi.PyMPIExecutor,
        executorlib.slurm.PySlurmExecutor or executorlib.flux.PyFluxExecutor depending on which backend is available. The
        executorlib.flux.PyFluxExecutor is the preferred choice while the executorlib.mpi.PyMPIExecutor is primarily used
        for development and testing. The executorlib.flux.PyFluxExecutor requires flux-core from the flux-framework to be
        installed and in addition flux-sched to enable GPU scheduling. Finally, the executorlib.slurm.PySlurmExecutor
        requires the SLURM workload manager to be installed on the system.

        Args:
            max_workers (int): for backwards compatibility with the standard library, max_workers also defines the
                               number of cores which can be used in parallel - just like the max_cores parameter. Using
                               max_cores is recommended, as computers have a limited number of compute cores.
            cache_directory (str, optional): The directory to store cache files. Defaults to "cache".
            max_cores (int): defines the number cores which can be used in parallel
            resource_dict (dict): A dictionary of resources required by the task. With the following keys:
                                  - cores (int): number of MPI cores to be used for each function call
                                  - threads_per_core (int): number of OpenMP threads to be used for each function call
                                  - gpus_per_core (int): number of GPUs per worker - defaults to 0
                                  - cwd (str/None): current working directory where the parallel python task is executed
                                  - openmpi_oversubscribe (bool): adds the `--oversubscribe` command line flag (OpenMPI
                                                                  and SLURM only) - default False
                                  - slurm_cmd_args (list): Additional command line arguments for the srun call (SLURM
                                                           only)
            flux_executor (flux.job.FluxExecutor): Flux Python interface to submit the workers to flux
            flux_executor_pmi_mode (str): PMI interface to use (OpenMPI v5 requires pmix) default is None (Flux only)
            flux_executor_nesting (bool): Provide hierarchically nested Flux job scheduler inside the submitted function.
            flux_log_files (bool, optional): Write flux stdout and stderr files. Defaults to False.
            hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an
                                      Executor running on a different compute node within the same allocation. And
                                      in principle any computer should be able to resolve that their own hostname
                                      points to the same address as localhost. Still MacOS >= 12 seems to disable
                                      this look up for security reasons. So on MacOS it is required to set this
                                      option to true
            block_allocation (boolean): To accelerate the submission of a series of python functions with the same
                                        resource requirements, executorlib supports block allocation. In this case all
                                        resources have to be defined on the executor, rather than during the submission
                                        of the individual function.
            init_function (None): optional function to preset arguments for functions which are submitted later
            disable_dependencies (boolean): Disable resolving future objects during the submission.
            refresh_rate (float): Set the refresh rate in seconds, how frequently the input queue is checked.
            plot_dependency_graph (bool): Plot the dependencies of multiple future objects without executing them. For
                                          debugging purposes and to get an overview of the specified dependencies.
            plot_dependency_graph_filename (str): Name of the file to store the plotted graph in.

        """
        default_resource_dict: dict = {
            "cores": 1,
            "threads_per_core": 1,
            "gpus_per_core": 0,
            "cwd": None,
            "openmpi_oversubscribe": False,
            "slurm_cmd_args": [],
        }
        if resource_dict is None:
            resource_dict = {}
        resource_dict.update(
            {k: v for k, v in default_resource_dict.items() if k not in resource_dict}
        )
        if not disable_dependencies:
            return ExecutorWithDependencies(
                executor=create_flux_executor(
                    max_workers=max_workers,
                    cache_directory=cache_directory,
                    max_cores=max_cores,
                    resource_dict=resource_dict,
                    flux_executor=flux_executor,
                    flux_executor_pmi_mode=flux_executor_pmi_mode,
                    flux_executor_nesting=flux_executor_nesting,
                    flux_log_files=flux_log_files,
                    hostname_localhost=hostname_localhost,
                    block_allocation=block_allocation,
                    init_function=init_function,
                ),
                max_cores=max_cores,
                refresh_rate=refresh_rate,
                plot_dependency_graph=plot_dependency_graph,
                plot_dependency_graph_filename=plot_dependency_graph_filename,
            )
        else:
            check_plot_dependency_graph(plot_dependency_graph=plot_dependency_graph)
            check_refresh_rate(refresh_rate=refresh_rate)
            return create_flux_executor(
                max_workers=max_workers,
                cache_directory=cache_directory,
                max_cores=max_cores,
                resource_dict=resource_dict,
                flux_executor=flux_executor,
                flux_executor_pmi_mode=flux_executor_pmi_mode,
                flux_executor_nesting=flux_executor_nesting,
                flux_log_files=flux_log_files,
                hostname_localhost=hostname_localhost,
                block_allocation=block_allocation,
                init_function=init_function,
            )


class FluxClusterExecutor:
    """
    The executorlib.Executor leverages either the message passing interface (MPI), the SLURM workload manager or
    preferable the flux framework for distributing python functions within a given resource allocation. In contrast to
    the mpi4py.futures.MPIPoolExecutor the executorlib.Executor can be executed in a serial python process and does not
    require the python script to be executed with MPI. It is even possible to execute the executorlib.Executor directly
    in an interactive Jupyter notebook.

    Args:
        max_workers (int): for backwards compatibility with the standard library, max_workers also defines the number of
                           cores which can be used in parallel - just like the max_cores parameter. Using max_cores is
                           recommended, as computers have a limited number of compute cores.
        cache_directory (str, optional): The directory to store cache files. Defaults to "cache".
        max_cores (int): defines the number cores which can be used in parallel
        resource_dict (dict): A dictionary of resources required by the task. With the following keys:
                              - cores (int): number of MPI cores to be used for each function call
                              - threads_per_core (int): number of OpenMP threads to be used for each function call
                              - gpus_per_core (int): number of GPUs per worker - defaults to 0
                              - cwd (str/None): current working directory where the parallel python task is executed
                              - openmpi_oversubscribe (bool): adds the `--oversubscribe` command line flag (OpenMPI and
                                                              SLURM only) - default False
                              - slurm_cmd_args (list): Additional command line arguments for the srun call (SLURM only)
        pysqa_config_directory (str, optional): path to the pysqa config directory (only for pysqa based backend).
        hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an
                                      Executor running on a different compute node within the same allocation. And
                                      in principle any computer should be able to resolve that their own hostname
                                      points to the same address as localhost. Still MacOS >= 12 seems to disable
                                      this look up for security reasons. So on MacOS it is required to set this
                                      option to true
        block_allocation (boolean): To accelerate the submission of a series of python functions with the same resource
                                    requirements, executorlib supports block allocation. In this case all resources have
                                    to be defined on the executor, rather than during the submission of the individual
                                    function.
        init_function (None): optional function to preset arguments for functions which are submitted later
        disable_dependencies (boolean): Disable resolving future objects during the submission.
        refresh_rate (float): Set the refresh rate in seconds, how frequently the input queue is checked.
        plot_dependency_graph (bool): Plot the dependencies of multiple future objects without executing them. For
                                      debugging purposes and to get an overview of the specified dependencies.
        plot_dependency_graph_filename (str): Name of the file to store the plotted graph in.

    Examples:
        ```
        >>> import numpy as np
        >>> from executorlib.interfaces.flux import FluxClusterExecutor
        >>>
        >>> def calc(i, j, k):
        >>>     from mpi4py import MPI
        >>>     size = MPI.COMM_WORLD.Get_size()
        >>>     rank = MPI.COMM_WORLD.Get_rank()
        >>>     return np.array([i, j, k]), size, rank
        >>>
        >>> def init_k():
        >>>     return {"k": 3}
        >>>
        >>> with FluxClusterExecutor(max_workers=2, init_function=init_k) as p:
        >>>     fs = p.submit(calc, 2, j=4)
        >>>     print(fs.result())
        [(array([2, 4, 3]), 2, 0), (array([2, 4, 3]), 2, 1)]
        ```
    """

    def __init__(
        self,
        max_workers: Optional[int] = None,
        cache_directory: Optional[str] = None,
        max_cores: Optional[int] = None,
        resource_dict: Optional[dict] = None,
        pysqa_config_directory: Optional[str] = None,
        hostname_localhost: Optional[bool] = None,
        block_allocation: bool = False,
        init_function: Optional[Callable] = None,
        disable_dependencies: bool = False,
        refresh_rate: float = 0.01,
        plot_dependency_graph: bool = False,
        plot_dependency_graph_filename: Optional[str] = None,
    ):
        # Use __new__() instead of __init__(). This function is only implemented to enable auto-completion.
        pass

    def __new__(
        cls,
        max_workers: Optional[int] = None,
        cache_directory: Optional[str] = None,
        max_cores: Optional[int] = None,
        resource_dict: Optional[dict] = None,
        pysqa_config_directory: Optional[str] = None,
        hostname_localhost: Optional[bool] = None,
        block_allocation: bool = False,
        init_function: Optional[Callable] = None,
        disable_dependencies: bool = False,
        refresh_rate: float = 0.01,
        plot_dependency_graph: bool = False,
        plot_dependency_graph_filename: Optional[str] = None,
    ):
        """
        Instead of returning a executorlib.Executor object this function returns either a executorlib.mpi.PyMPIExecutor,
        executorlib.slurm.PySlurmExecutor or executorlib.flux.PyFluxExecutor depending on which backend is available. The
        executorlib.flux.PyFluxExecutor is the preferred choice while the executorlib.mpi.PyMPIExecutor is primarily used
        for development and testing. The executorlib.flux.PyFluxExecutor requires flux-core from the flux-framework to be
        installed and in addition flux-sched to enable GPU scheduling. Finally, the executorlib.slurm.PySlurmExecutor
        requires the SLURM workload manager to be installed on the system.

        Args:
            max_workers (int): for backwards compatibility with the standard library, max_workers also defines the
                               number of cores which can be used in parallel - just like the max_cores parameter. Using
                               max_cores is recommended, as computers have a limited number of compute cores.
            cache_directory (str, optional): The directory to store cache files. Defaults to "cache".
            max_cores (int): defines the number cores which can be used in parallel
            resource_dict (dict): A dictionary of resources required by the task. With the following keys:
                                  - cores (int): number of MPI cores to be used for each function call
                                  - threads_per_core (int): number of OpenMP threads to be used for each function call
                                  - gpus_per_core (int): number of GPUs per worker - defaults to 0
                                  - cwd (str/None): current working directory where the parallel python task is executed
                                  - openmpi_oversubscribe (bool): adds the `--oversubscribe` command line flag (OpenMPI
                                                                  and SLURM only) - default False
                                  - slurm_cmd_args (list): Additional command line arguments for the srun call (SLURM
                                                           only)
            pysqa_config_directory (str, optional): path to the pysqa config directory (only for pysqa based backend).
            hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
                                      context of an HPC cluster this essential to be able to communicate to an
                                      Executor running on a different compute node within the same allocation. And
                                      in principle any computer should be able to resolve that their own hostname
                                      points to the same address as localhost. Still MacOS >= 12 seems to disable
                                      this look up for security reasons. So on MacOS it is required to set this
                                      option to true
            block_allocation (boolean): To accelerate the submission of a series of python functions with the same
                                        resource requirements, executorlib supports block allocation. In this case all
                                        resources have to be defined on the executor, rather than during the submission
                                        of the individual function.
            init_function (None): optional function to preset arguments for functions which are submitted later
            disable_dependencies (boolean): Disable resolving future objects during the submission.
            refresh_rate (float): Set the refresh rate in seconds, how frequently the input queue is checked.
            plot_dependency_graph (bool): Plot the dependencies of multiple future objects without executing them. For
                                          debugging purposes and to get an overview of the specified dependencies.
            plot_dependency_graph_filename (str): Name of the file to store the plotted graph in.

        """
        default_resource_dict: dict = {
            "cores": 1,
            "threads_per_core": 1,
            "gpus_per_core": 0,
            "cwd": None,
            "openmpi_oversubscribe": False,
            "slurm_cmd_args": [],
        }
        if resource_dict is None:
            resource_dict = {}
        resource_dict.update(
            {k: v for k, v in default_resource_dict.items() if k not in resource_dict}
        )
        if not plot_dependency_graph:
            from executorlib.cache.executor import create_file_executor

            return create_file_executor(
                max_workers=max_workers,
                backend="flux_submission",
                max_cores=max_cores,
                cache_directory=cache_directory,
                resource_dict=resource_dict,
                flux_executor=None,
                flux_executor_pmi_mode=None,
                flux_executor_nesting=False,
                flux_log_files=False,
                pysqa_config_directory=pysqa_config_directory,
                hostname_localhost=hostname_localhost,
                block_allocation=block_allocation,
                init_function=init_function,
                disable_dependencies=disable_dependencies,
            )
        else:
            return ExecutorWithDependencies(
                executor=create_flux_executor(
                    max_workers=max_workers,
                    cache_directory=cache_directory,
                    max_cores=max_cores,
                    resource_dict=resource_dict,
                    flux_executor=None,
                    flux_executor_pmi_mode=None,
                    flux_executor_nesting=False,
                    flux_log_files=False,
                    hostname_localhost=hostname_localhost,
                    block_allocation=block_allocation,
                    init_function=init_function,
                ),
                max_cores=max_cores,
                refresh_rate=refresh_rate,
                plot_dependency_graph=plot_dependency_graph,
                plot_dependency_graph_filename=plot_dependency_graph_filename,
            )


def create_flux_executor(
    max_workers: Optional[int] = None,
    max_cores: Optional[int] = None,
    cache_directory: Optional[str] = None,
    resource_dict: Optional[dict] = None,
    flux_executor=None,
    flux_executor_pmi_mode: Optional[str] = None,
    flux_executor_nesting: bool = False,
    flux_log_files: bool = False,
    hostname_localhost: Optional[bool] = None,
    block_allocation: bool = False,
    init_function: Optional[Callable] = None,
) -> Union[InteractiveStepExecutor, InteractiveExecutor]:
    """
    Create a flux executor

    Args:
        max_workers (int): for backwards compatibility with the standard library, max_workers also defines the
                           number of cores which can be used in parallel - just like the max_cores parameter. Using
                           max_cores is recommended, as computers have a limited number of compute cores.
        max_cores (int): defines the number cores which can be used in parallel
        cache_directory (str, optional): The directory to store cache files. Defaults to "cache".
        resource_dict (dict): A dictionary of resources required by the task. With the following keys:
                              - cores (int): number of MPI cores to be used for each function call
                              - threads_per_core (int): number of OpenMP threads to be used for each function call
                              - gpus_per_core (int): number of GPUs per worker - defaults to 0
                              - cwd (str/None): current working directory where the parallel python task is executed
                              - openmpi_oversubscribe (bool): adds the `--oversubscribe` command line flag (OpenMPI
                                                              and SLURM only) - default False
                              - slurm_cmd_args (list): Additional command line arguments for the srun call (SLURM
                                                       only)
        flux_executor (flux.job.FluxExecutor): Flux Python interface to submit the workers to flux
        flux_executor_pmi_mode (str): PMI interface to use (OpenMPI v5 requires pmix) default is None (Flux only)
        flux_executor_nesting (bool): Provide hierarchically nested Flux job scheduler inside the submitted function.
        flux_log_files (bool, optional): Write flux stdout and stderr files. Defaults to False.
        hostname_localhost (boolean): use localhost instead of the hostname to establish the zmq connection. In the
                                  context of an HPC cluster this essential to be able to communicate to an
                                  Executor running on a different compute node within the same allocation. And
                                  in principle any computer should be able to resolve that their own hostname
                                  points to the same address as localhost. Still MacOS >= 12 seems to disable
                                  this look up for security reasons. So on MacOS it is required to set this
                                  option to true
        block_allocation (boolean): To accelerate the submission of a series of python functions with the same
                                    resource requirements, executorlib supports block allocation. In this case all
                                    resources have to be defined on the executor, rather than during the submission
                                    of the individual function.
        init_function (None): optional function to preset arguments for functions which are submitted later

    Returns:
        InteractiveStepExecutor/ InteractiveExecutor
    """
    if resource_dict is None:
        resource_dict = {}
    cores_per_worker = resource_dict.get("cores", 1)
    resource_dict["cache_directory"] = cache_directory
    resource_dict["hostname_localhost"] = hostname_localhost
    check_init_function(block_allocation=block_allocation, init_function=init_function)
    check_pmi(backend="flux_allocation", pmi=flux_executor_pmi_mode)
    check_oversubscribe(oversubscribe=resource_dict.get("openmpi_oversubscribe", False))
    check_command_line_argument_lst(
        command_line_argument_lst=resource_dict.get("slurm_cmd_args", [])
    )
    if "openmpi_oversubscribe" in resource_dict:
        del resource_dict["openmpi_oversubscribe"]
    if "slurm_cmd_args" in resource_dict:
        del resource_dict["slurm_cmd_args"]
    resource_dict["flux_executor"] = flux_executor
    resource_dict["flux_executor_pmi_mode"] = flux_executor_pmi_mode
    resource_dict["flux_executor_nesting"] = flux_executor_nesting
    resource_dict["flux_log_files"] = flux_log_files
    if block_allocation:
        resource_dict["init_function"] = init_function
        max_workers = validate_number_of_cores(
            max_cores=max_cores,
            max_workers=max_workers,
            cores_per_worker=cores_per_worker,
            set_local_cores=False,
        )
        validate_max_workers_flux(
            max_workers=max_workers,
            cores=cores_per_worker,
            threads_per_core=resource_dict.get("threads_per_core", 1),
        )
        return InteractiveExecutor(
            max_workers=max_workers,
            executor_kwargs=resource_dict,
            spawner=FluxPythonSpawner,
        )
    else:
        return InteractiveStepExecutor(
            max_cores=max_cores,
            max_workers=max_workers,
            executor_kwargs=resource_dict,
            spawner=FluxPythonSpawner,
        )

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