#339

Committed 29 Jan 2025 01:23PM UTC coverage: 59.538% (-0.6%) from 60.167%

Build # #339

Build Type

Pull #193

github

Committed by

web-flow

Commit Message

Merge 94c260498 into 0978523bc

Pull Request Pull Request #193: Add accessor for the extension field.

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/src/main/java/org/w3id/cwl/cwl1_2/ExpressionToolImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.w3id.cwl.cwl1_2;

import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
import org.w3id.cwl.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#ExpressionTool</I><BR> <BLOCKQUOTE>
 An ExpressionTool is a type of Process object that can be run by itself
 or as a Workflow step. It executes a pure Javascript expression that has
 access to the same input parameters as a workflow. It is meant to be used
 sparingly as a way to isolate complex Javascript expressions that need to
 operate on input data and produce some result; perhaps just a
 rearrangement of the inputs. No Docker software container is required
 or allowed.
  </BLOCKQUOTE>
 */
public class ExpressionToolImpl extends SaveableImpl implements ExpressionTool {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private java.util.Optional<String> id;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Process/id</I><BR>
   * <BLOCKQUOTE>
   * The unique identifier for this object.
   * 
   * Only useful for `$graph` at `Process` level. Should not be exposed
   * to users in graphical or terminal user interfaces.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getId() {
    return this.id;
  }

  private ExpressionTool_class class_;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/class</I><BR>

   */

  public ExpressionTool_class getClass_() {
    return this.class_;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private java.util.List<Object> inputs;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#inputs</I><BR>
   * <BLOCKQUOTE>
   * Defines the input parameters of the process.  The process is ready to
   * run when all required input parameters are associated with concrete
   * values.  Input parameters include a schema for each parameter which is
   * used to validate the input object.  It may also be used to build a user
   * interface for constructing the input object.
   * 
   * When accepting an input object, all input parameters must have a value.
   * If an input parameter is missing from the input object, it must be
   * assigned a value of `null` (or the value of `default` for that
   * parameter, if provided) for the purposes of validation and evaluation
   * of expressions.
   *    * </BLOCKQUOTE>
   */

  public java.util.List<Object> getInputs() {
    return this.inputs;
  }

  private java.util.List<Object> outputs;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#outputs</I><BR>
   * <BLOCKQUOTE>
   * Defines the parameters representing the output of the process.  May be
   * used to generate and/or validate the output object.
   *    * </BLOCKQUOTE>
   */

  public java.util.List<Object> getOutputs() {
    return this.outputs;
  }

  private java.util.Optional<java.util.List<Object>> requirements;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#requirements</I><BR>
   * <BLOCKQUOTE>
   * Declares requirements that apply to either the runtime environment or the
   * workflow engine that must be met in order to execute this process.  If
   * an implementation cannot satisfy all requirements, or a requirement is
   * listed which is not recognized by the implementation, it is a fatal
   * error and the implementation must not attempt to run the process,
   * unless overridden at user option.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<Object>> getRequirements() {
    return this.requirements;
  }

  private java.util.Optional<java.util.List<Object>> hints;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#hints</I><BR>
   * <BLOCKQUOTE>
   * Declares hints applying to either the runtime environment or the
   * workflow engine that may be helpful in executing this process.  It is
   * not an error if an implementation cannot satisfy all hints, however
   * the implementation may report a warning.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<Object>> getHints() {
    return this.hints;
  }

  private java.util.Optional<CWLVersion> cwlVersion;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#cwlVersion</I><BR>
   * <BLOCKQUOTE>
   * CWL document version. Always required at the document root. Not
   * required for a Process embedded inside another Process.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<CWLVersion> getCwlVersion() {
    return this.cwlVersion;
  }

  private java.util.Optional<java.util.List<String>> intent;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Process/intent</I><BR>
   * <BLOCKQUOTE>
   * An identifier for the type of computational operation, of this Process.
   * Especially useful for [`Operation`](Workflow.html#Operation), but can also be used for
   * [`CommandLineTool`](CommandLineTool.html#CommandLineTool),
   * [`Workflow`](Workflow.html#Workflow), or [ExpressionTool](Workflow.html#ExpressionTool).
   * 
   * If provided, then this must be an IRI of a concept node that
   * represents the type of operation, preferably defined within an ontology.
   * 
   * For example, in the domain of bioinformatics, one can use an IRI from
   * the EDAM Ontology's [Operation concept nodes](http://edamontology.org/operation_0004),
   * like [Alignment](http://edamontology.org/operation_2928),
   * or [Clustering](http://edamontology.org/operation_3432); or a more
   * specific Operation concept like
   * [Split read mapping](http://edamontology.org/operation_3199).
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<String>> getIntent() {
    return this.intent;
  }

  private String expression;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/expression</I><BR>
   * <BLOCKQUOTE>
   * The expression to execute.  The expression must return a plain
   * Javascript object which matches the output parameters of the
   * ExpressionTool.
   *    * </BLOCKQUOTE>
   */

  public String getExpression() {
    return this.expression;
  }

  /**
   * Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of ExpressionToolImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public ExpressionToolImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("ExpressionToolImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    java.util.Optional<String> id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_optional_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    Boolean __original_is_null = id == null;
    if (id == null) {
      if (__docRoot != null) {
        id = java.util.Optional.of(__docRoot);
      } else {
        id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());
      }
    }
    if (__original_is_null) {
        __baseUri = __baseUri_;
    } else {
        __baseUri = (String) id.orElse(null);
    }
    ExpressionTool_class class_;
    try {
      class_ =
          LoaderInstances
              .uri_ExpressionTool_class_False_True_None_None
              .loadField(__doc.get("class"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      class_ = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `class` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    java.util.List<Object> inputs;
    try {
      inputs =
          LoaderInstances
              .idmap_inputs_array_of_WorkflowInputParameter
              .loadField(__doc.get("inputs"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      inputs = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `inputs` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.List<Object> outputs;
    try {
      outputs =
          LoaderInstances
              .idmap_outputs_array_of_ExpressionToolOutputParameter
              .loadField(__doc.get("outputs"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      outputs = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `outputs` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<java.util.List<Object>> requirements;

    if (__doc.containsKey("requirements")) {
      try {
        requirements =
            LoaderInstances
                .idmap_requirements_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement
                .loadField(__doc.get("requirements"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        requirements = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `requirements` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      requirements = null;
    }
    java.util.Optional<java.util.List<Object>> hints;

    if (__doc.containsKey("hints")) {
      try {
        hints =
            LoaderInstances
                .idmap_hints_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement_or_AnyInstance
                .loadField(__doc.get("hints"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        hints = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `hints` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      hints = null;
    }
    java.util.Optional<CWLVersion> cwlVersion;

    if (__doc.containsKey("cwlVersion")) {
      try {
        cwlVersion =
            LoaderInstances
                .uri_optional_CWLVersion_False_True_None_None
                .loadField(__doc.get("cwlVersion"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        cwlVersion = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `cwlVersion` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      cwlVersion = null;
    }
    java.util.Optional<java.util.List<String>> intent;

    if (__doc.containsKey("intent")) {
      try {
        intent =
            LoaderInstances
                .uri_optional_array_of_StringInstance_True_False_None_None
                .loadField(__doc.get("intent"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        intent = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `intent` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      intent = null;
    }
    String expression;
    try {
      expression =
          LoaderInstances
              .ExpressionLoader
              .loadField(__doc.get("expression"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      expression = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `expression` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.id = (java.util.Optional<String>) id;
    this.label = (java.util.Optional<String>) label;
    this.doc = (Object) doc;
    this.inputs = (java.util.List<Object>) inputs;
    this.outputs = (java.util.List<Object>) outputs;
    this.requirements = (java.util.Optional<java.util.List<Object>>) requirements;
    this.hints = (java.util.Optional<java.util.List<Object>>) hints;
    this.cwlVersion = (java.util.Optional<CWLVersion>) cwlVersion;
    this.intent = (java.util.Optional<java.util.List<String>>) intent;
    this.class_ = (ExpressionTool_class) class_;
    this.expression = (String) expression;
  }
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.w3id.cwl.cwl1_2;
16
17	import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
18	import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
19	import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
21	import org.w3id.cwl.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#ExpressionTool</I><BR> <BLOCKQUOTE>
25	An ExpressionTool is a type of Process object that can be run by itself
26	or as a Workflow step. It executes a pure Javascript expression that has
27	access to the same input parameters as a workflow. It is meant to be used
28	sparingly as a way to isolate complex Javascript expressions that need to
29	operate on input data and produce some result; perhaps just a
30	rearrangement of the inputs. No Docker software container is required
31	or allowed.
32	</BLOCKQUOTE>
33	*/
34	public class ExpressionToolImpl extends SaveableImpl implements ExpressionTool {
35	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
36	private java.util.Map<String, Object> extensionFields_ =	1✔
37	new java.util.HashMap<String, Object>();
38	public java.util.Map<String, Object> getExtensionFields() {
NEW 39	return this.extensionFields_;	×
40	}
41
42	private java.util.Optional<String> id;
43
44	/**
45	* Getter for property <I>https://w3id.org/cwl/cwl#Process/id</I><BR>
46	* <BLOCKQUOTE>
47	* The unique identifier for this object.
48	*
49	* Only useful for `$graph` at `Process` level. Should not be exposed
50	* to users in graphical or terminal user interfaces.
51	* * </BLOCKQUOTE>
52	*/
53
54	public java.util.Optional<String> getId() {
55	return this.id;	×
56	}
57
58	private ExpressionTool_class class_;
59
60	/**
61	* Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/class</I><BR>
62
63	*/
64
65	public ExpressionTool_class getClass_() {
66	return this.class_;	×
67	}
68
69	private java.util.Optional<String> label;
70
71	/**
72	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
73	* <BLOCKQUOTE>
74	* A short, human-readable label of this object. * </BLOCKQUOTE>
75	*/
76
77	public java.util.Optional<String> getLabel() {
78	return this.label;	×
79	}
80
81	private Object doc;
82
83	/**
84	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
85	* <BLOCKQUOTE>
86	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
87	*/
88
89	public Object getDoc() {
90	return this.doc;	×
91	}
92
93	private java.util.List<Object> inputs;
94
95	/**
96	* Getter for property <I>https://w3id.org/cwl/cwl#inputs</I><BR>
97	* <BLOCKQUOTE>
98	* Defines the input parameters of the process. The process is ready to
99	* run when all required input parameters are associated with concrete
100	* values. Input parameters include a schema for each parameter which is
101	* used to validate the input object. It may also be used to build a user
102	* interface for constructing the input object.
103	*
104	* When accepting an input object, all input parameters must have a value.
105	* If an input parameter is missing from the input object, it must be
106	* assigned a value of `null` (or the value of `default` for that
107	* parameter, if provided) for the purposes of validation and evaluation
108	* of expressions.
109	* * </BLOCKQUOTE>
110	*/
111
112	public java.util.List<Object> getInputs() {
113	return this.inputs;	×
114	}
115
116	private java.util.List<Object> outputs;
117
118	/**
119	* Getter for property <I>https://w3id.org/cwl/cwl#outputs</I><BR>
120	* <BLOCKQUOTE>
121	* Defines the parameters representing the output of the process. May be
122	* used to generate and/or validate the output object.
123	* * </BLOCKQUOTE>
124	*/
125
126	public java.util.List<Object> getOutputs() {
127	return this.outputs;	×
128	}
129
130	private java.util.Optional<java.util.List<Object>> requirements;
131
132	/**
133	* Getter for property <I>https://w3id.org/cwl/cwl#requirements</I><BR>
134	* <BLOCKQUOTE>
135	* Declares requirements that apply to either the runtime environment or the
136	* workflow engine that must be met in order to execute this process. If
137	* an implementation cannot satisfy all requirements, or a requirement is
138	* listed which is not recognized by the implementation, it is a fatal
139	* error and the implementation must not attempt to run the process,
140	* unless overridden at user option.
141	* * </BLOCKQUOTE>
142	*/
143
144	public java.util.Optional<java.util.List<Object>> getRequirements() {
145	return this.requirements;	×
146	}
147
148	private java.util.Optional<java.util.List<Object>> hints;
149
150	/**
151	* Getter for property <I>https://w3id.org/cwl/cwl#hints</I><BR>
152	* <BLOCKQUOTE>
153	* Declares hints applying to either the runtime environment or the
154	* workflow engine that may be helpful in executing this process. It is
155	* not an error if an implementation cannot satisfy all hints, however
156	* the implementation may report a warning.
157	* * </BLOCKQUOTE>
158	*/
159
160	public java.util.Optional<java.util.List<Object>> getHints() {
161	return this.hints;	×
162	}
163
164	private java.util.Optional<CWLVersion> cwlVersion;
165
166	/**
167	* Getter for property <I>https://w3id.org/cwl/cwl#cwlVersion</I><BR>
168	* <BLOCKQUOTE>
169	* CWL document version. Always required at the document root. Not
170	* required for a Process embedded inside another Process.
171	* * </BLOCKQUOTE>
172	*/
173
174	public java.util.Optional<CWLVersion> getCwlVersion() {
175	return this.cwlVersion;	×
176	}
177
178	private java.util.Optional<java.util.List<String>> intent;
179
180	/**
181	* Getter for property <I>https://w3id.org/cwl/cwl#Process/intent</I><BR>
182	* <BLOCKQUOTE>
183	* An identifier for the type of computational operation, of this Process.
184	* Especially useful for [`Operation`](Workflow.html#Operation), but can also be used for
185	* [`CommandLineTool`](CommandLineTool.html#CommandLineTool),
186	* [`Workflow`](Workflow.html#Workflow), or [ExpressionTool](Workflow.html#ExpressionTool).
187	*
188	* If provided, then this must be an IRI of a concept node that
189	* represents the type of operation, preferably defined within an ontology.
190	*
191	* For example, in the domain of bioinformatics, one can use an IRI from
192	* the EDAM Ontology's [Operation concept nodes](http://edamontology.org/operation_0004),
193	* like [Alignment](http://edamontology.org/operation_2928),
194	* or [Clustering](http://edamontology.org/operation_3432); or a more
195	* specific Operation concept like
196	* [Split read mapping](http://edamontology.org/operation_3199).
197	* * </BLOCKQUOTE>
198	*/
199
200	public java.util.Optional<java.util.List<String>> getIntent() {
201	return this.intent;	×
202	}
203
204	private String expression;
205
206	/**
207	* Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/expression</I><BR>
208	* <BLOCKQUOTE>
209	* The expression to execute. The expression must return a plain
210	* Javascript object which matches the output parameters of the
211	* ExpressionTool.
212	* * </BLOCKQUOTE>
213	*/
214
215	public String getExpression() {
216	return this.expression;	×
217	}
218
219	/**
220	* Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of ExpressionToolImpl.
221	*
222	* @param __doc_ Document fragment to load this record object from (presumably a
223	{@link java.util.Map}).
224	* @param __baseUri_ Base URI to generate child document IDs against.
225	* @param __loadingOptions Context for loading URIs and populating objects.
226	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
227	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
228	* or validation of fields fails.
229	*/
230	public ExpressionToolImpl(
231	final Object __doc_,
232	final String __baseUri_,
233	LoadingOptions __loadingOptions,
234	final String __docRoot_) {
235	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
236	// Prefix plumbing variables with '__' to reduce likelihood of collision with
237	// generated names.
238	String __baseUri = __baseUri_;	1✔
239	String __docRoot = __docRoot_;	1✔
240	if (!(__doc_ instanceof java.util.Map)) {	1✔
241	throw new ValidationException("ExpressionToolImpl called on non-map");	×
242	}
243	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
244	final java.util.List<ValidationException> __errors =	1✔
245	new java.util.ArrayList<ValidationException>();
246	if (__loadingOptions != null) {	1✔
247	this.loadingOptions_ = __loadingOptions;	1✔
248	}
249	java.util.Optional<String> id;
250
251	if (__doc.containsKey("id")) {	1✔
252	try {
253	id =	1✔
254	LoaderInstances
255	.uri_optional_StringInstance_True_False_None_None
256	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	1✔
257	} catch (ValidationException e) {	×
258	id = null; // won't be used but prevents compiler from complaining.	×
259	final String __message = "the `id` field is not valid because:";	×
260	__errors.add(new ValidationException(__message, e));	×
261	}	1✔
262
263	} else {
264	id = null;	1✔
265	}
266
267	Boolean __original_is_null = id == null;	1✔
268	if (id == null) {	1✔
269	if (__docRoot != null) {	1✔
270	id = java.util.Optional.of(__docRoot);	1✔
271	} else {
272	id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());	1✔
273	}
274	}
275	if (__original_is_null) {	1✔
276	__baseUri = __baseUri_;	1✔
277	} else {
278	__baseUri = (String) id.orElse(null);	1✔
279	}
280	ExpressionTool_class class_;
281	try {
282	class_ =	1✔
283	LoaderInstances
284	.uri_ExpressionTool_class_False_True_None_None
285	.loadField(__doc.get("class"), __baseUri, __loadingOptions);	1✔
286	} catch (ValidationException e) {	1✔
287	class_ = null; // won't be used but prevents compiler from complaining.	1✔
288	final String __message = "the `class` field is not valid because:";	1✔
289	__errors.add(new ValidationException(__message, e));	1✔
290	}	1✔
291	java.util.Optional<String> label;
292
293	if (__doc.containsKey("label")) {	1✔
294	try {
295	label =	×
296	LoaderInstances
297	.optional_StringInstance
298	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
299	} catch (ValidationException e) {	×
300	label = null; // won't be used but prevents compiler from complaining.	×
301	final String __message = "the `label` field is not valid because:";	×
302	__errors.add(new ValidationException(__message, e));	×
303	}	×
304
305	} else {
306	label = null;	1✔
307	}
308	Object doc;
309
310	if (__doc.containsKey("doc")) {	1✔
311	try {
312	doc =	1✔
313	LoaderInstances
314	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
315	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	1✔
316	} catch (ValidationException e) {	×
317	doc = null; // won't be used but prevents compiler from complaining.	×
318	final String __message = "the `doc` field is not valid because:";	×
319	__errors.add(new ValidationException(__message, e));	×
320	}	1✔
321
322	} else {
323	doc = null;	1✔
324	}
325	java.util.List<Object> inputs;
326	try {
327	inputs =	1✔
328	LoaderInstances
329	.idmap_inputs_array_of_WorkflowInputParameter
330	.loadField(__doc.get("inputs"), __baseUri, __loadingOptions);	1✔
331	} catch (ValidationException e) {	×
332	inputs = null; // won't be used but prevents compiler from complaining.	×
333	final String __message = "the `inputs` field is not valid because:";	×
334	__errors.add(new ValidationException(__message, e));	×
335	}	1✔
336	java.util.List<Object> outputs;
337	try {
338	outputs =	1✔
339	LoaderInstances
340	.idmap_outputs_array_of_ExpressionToolOutputParameter
341	.loadField(__doc.get("outputs"), __baseUri, __loadingOptions);	1✔
342	} catch (ValidationException e) {	×
343	outputs = null; // won't be used but prevents compiler from complaining.	×
344	final String __message = "the `outputs` field is not valid because:";	×
345	__errors.add(new ValidationException(__message, e));	×
346	}	1✔
347	java.util.Optional<java.util.List<Object>> requirements;
348
349	if (__doc.containsKey("requirements")) {	1✔
350	try {
351	requirements =	1✔
352	LoaderInstances
353	.idmap_requirements_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement
354	.loadField(__doc.get("requirements"), __baseUri, __loadingOptions);	1✔
355	} catch (ValidationException e) {	×
356	requirements = null; // won't be used but prevents compiler from complaining.	×
357	final String __message = "the `requirements` field is not valid because:";	×
358	__errors.add(new ValidationException(__message, e));	×
359	}	1✔
360
361	} else {
362	requirements = null;	1✔
363	}
364	java.util.Optional<java.util.List<Object>> hints;
365
366	if (__doc.containsKey("hints")) {	1✔
367	try {
368	hints =	1✔
369	LoaderInstances
370	.idmap_hints_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement_or_AnyInstance
371	.loadField(__doc.get("hints"), __baseUri, __loadingOptions);	1✔
372	} catch (ValidationException e) {	×
373	hints = null; // won't be used but prevents compiler from complaining.	×
374	final String __message = "the `hints` field is not valid because:";	×
375	__errors.add(new ValidationException(__message, e));	×
376	}	1✔
377
378	} else {
379	hints = null;	1✔
380	}
381	java.util.Optional<CWLVersion> cwlVersion;
382
383	if (__doc.containsKey("cwlVersion")) {	1✔
384	try {
385	cwlVersion =	1✔
386	LoaderInstances
387	.uri_optional_CWLVersion_False_True_None_None
388	.loadField(__doc.get("cwlVersion"), __baseUri, __loadingOptions);	1✔
389	} catch (ValidationException e) {	×
390	cwlVersion = null; // won't be used but prevents compiler from complaining.	×
391	final String __message = "the `cwlVersion` field is not valid because:";	×
392	__errors.add(new ValidationException(__message, e));	×
393	}	1✔
394
395	} else {
396	cwlVersion = null;	1✔
397	}
398	java.util.Optional<java.util.List<String>> intent;
399
400	if (__doc.containsKey("intent")) {	1✔
401	try {
402	intent =	×
403	LoaderInstances
404	.uri_optional_array_of_StringInstance_True_False_None_None
405	.loadField(__doc.get("intent"), __baseUri, __loadingOptions);	×
406	} catch (ValidationException e) {	×
407	intent = null; // won't be used but prevents compiler from complaining.	×
408	final String __message = "the `intent` field is not valid because:";	×
409	__errors.add(new ValidationException(__message, e));	×
410	}	×
411
412	} else {
413	intent = null;	1✔
414	}
415	String expression;
416	try {
417	expression =	1✔
418	LoaderInstances
419	.ExpressionLoader
420	.loadField(__doc.get("expression"), __baseUri, __loadingOptions);	1✔
421	} catch (ValidationException e) {	1✔
422	expression = null; // won't be used but prevents compiler from complaining.	1✔
423	final String __message = "the `expression` field is not valid because:";	1✔
424	__errors.add(new ValidationException(__message, e));	1✔
425	}	1✔
426	if (!__errors.isEmpty()) {	1✔
427	throw new ValidationException("Trying 'RecordField'", __errors);	1✔
428	}
429	this.id = (java.util.Optional<String>) id;	1✔
430	this.label = (java.util.Optional<String>) label;	1✔
431	this.doc = (Object) doc;	1✔
432	this.inputs = (java.util.List<Object>) inputs;	1✔
433	this.outputs = (java.util.List<Object>) outputs;	1✔
434	this.requirements = (java.util.Optional<java.util.List<Object>>) requirements;	1✔
435	this.hints = (java.util.Optional<java.util.List<Object>>) hints;	1✔
436	this.cwlVersion = (java.util.Optional<CWLVersion>) cwlVersion;	1✔
437	this.intent = (java.util.Optional<java.util.List<String>>) intent;	1✔
438	this.class_ = (ExpressionTool_class) class_;	1✔
439	this.expression = (String) expression;	1✔
440	}	1✔
441	}

common-workflow-language / cwljava / #339

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