#339

Committed 29 Jan 2025 01:23PM UTC coverage: 59.538% (-0.6%) from 60.167%

Build # #339

Build Type

Pull #193

github

Committed by

web-flow

Commit Message

Merge 94c260498 into 0978523bc

Pull Request Pull Request #193: Add accessor for the extension field.

Coverage Stats

0 of 129 new or added lines in 129 files covered. (0.0%)

7347 of 12340 relevant lines covered (59.54%)

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68.57

/src/main/java/org/w3id/cwl/cwl1_1/SecondaryFileSchemaImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.w3id.cwl.cwl1_1;

import org.w3id.cwl.cwl1_1.utils.LoaderInstances;
import org.w3id.cwl.cwl1_1.utils.LoadingOptions;
import org.w3id.cwl.cwl1_1.utils.LoadingOptionsBuilder;
import org.w3id.cwl.cwl1_1.utils.SaveableImpl;
import org.w3id.cwl.cwl1_1.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#SecondaryFileSchema</I><BR>
 */
public class SecondaryFileSchemaImpl extends SaveableImpl implements SecondaryFileSchema {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private Object pattern;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#SecondaryFileSchema/pattern</I><BR>
   * <BLOCKQUOTE>
   * Provides a pattern or expression specifying files or directories that
   * should be included alongside the primary file.
   * 
   * If the value is an expression, the value of `self` in the expression
   * must be the primary input or output File object to which this binding
   * applies.  The `basename`, `nameroot` and `nameext` fields must be
   * present in `self`.  For `CommandLineTool` outputs the `path` field must
   * also be present.  The expression must return a filename string relative
   * to the path to the primary File, a File or Directory object with either
   * `path` or `location` and `basename` fields set, or an array consisting
   * of strings or File or Directory objects.  It is legal to reference an
   * unchanged File or Directory object taken from input as a secondaryFile.
   * The expression may return "null" in which case there is no secondaryFile
   * from that expression.
   * 
   * To work on non-filename-preserving storage systems, portable tool
   * descriptions should avoid constructing new values from `location`, but
   * should construct relative references using `basename` or `nameroot`
   * instead.
   * 
   * If a value in `secondaryFiles` is a string that is not an expression,
   * it specifies that the following pattern should be applied to the path
   * of the primary file to yield a filename relative to the primary File:
   * 
   *   1. If string ends with `?` character, remove the last `?` and mark
   *     the resulting secondary file as optional.
   *   2. If string begins with one or more caret `^` characters, for each
   *     caret, remove the last file extension from the path (the last
   *     period `.` and all following characters).  If there are no file
   *     extensions, the path is unchanged.
   *   3. Append the remainder of the string to the end of the file path.
   *    * </BLOCKQUOTE>
   */

  public Object getPattern() {
    return this.pattern;
  }

  private Object required;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#SecondaryFileSchema/required</I><BR>
   * <BLOCKQUOTE>
   * An implementation must not fail workflow execution if `required` is
   * set to `false` and the expected secondary file does not exist.
   * Default value for `required` field is `true` for secondary files on
   * input and `false` for secondary files on output.
   *    * </BLOCKQUOTE>
   */

  public Object getRequired() {
    return this.required;
  }

  /**
   * Used by {@link org.w3id.cwl.cwl1_1.utils.RootLoader} to construct instances of SecondaryFileSchemaImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public SecondaryFileSchemaImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("SecondaryFileSchemaImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    Object pattern;
    try {
      pattern =
          LoaderInstances
              .union_of_StringInstance_or_ExpressionLoader
              .loadField(__doc.get("pattern"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      pattern = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `pattern` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    Object required;

    if (__doc.containsKey("required")) {
      try {
        required =
            LoaderInstances
                .union_of_NullInstance_or_BooleanInstance_or_ExpressionLoader
                .loadField(__doc.get("required"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        required = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `required` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      required = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.pattern = (Object) pattern;
    this.required = (Object) required;
  }
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.w3id.cwl.cwl1_1;
16
17	import org.w3id.cwl.cwl1_1.utils.LoaderInstances;
18	import org.w3id.cwl.cwl1_1.utils.LoadingOptions;
19	import org.w3id.cwl.cwl1_1.utils.LoadingOptionsBuilder;
20	import org.w3id.cwl.cwl1_1.utils.SaveableImpl;
21	import org.w3id.cwl.cwl1_1.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#SecondaryFileSchema</I><BR>
25	*/
26	public class SecondaryFileSchemaImpl extends SaveableImpl implements SecondaryFileSchema {
27	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
28	private java.util.Map<String, Object> extensionFields_ =	1✔
29	new java.util.HashMap<String, Object>();
30	public java.util.Map<String, Object> getExtensionFields() {
NEW 31	return this.extensionFields_;	×
32	}
33
34	private Object pattern;
35
36	/**
37	* Getter for property <I>https://w3id.org/cwl/cwl#SecondaryFileSchema/pattern</I><BR>
38	* <BLOCKQUOTE>
39	* Provides a pattern or expression specifying files or directories that
40	* should be included alongside the primary file.
41	*
42	* If the value is an expression, the value of `self` in the expression
43	* must be the primary input or output File object to which this binding
44	* applies. The `basename`, `nameroot` and `nameext` fields must be
45	* present in `self`. For `CommandLineTool` outputs the `path` field must
46	* also be present. The expression must return a filename string relative
47	* to the path to the primary File, a File or Directory object with either
48	* `path` or `location` and `basename` fields set, or an array consisting
49	* of strings or File or Directory objects. It is legal to reference an
50	* unchanged File or Directory object taken from input as a secondaryFile.
51	* The expression may return "null" in which case there is no secondaryFile
52	* from that expression.
53	*
54	* To work on non-filename-preserving storage systems, portable tool
55	* descriptions should avoid constructing new values from `location`, but
56	* should construct relative references using `basename` or `nameroot`
57	* instead.
58	*
59	* If a value in `secondaryFiles` is a string that is not an expression,
60	* it specifies that the following pattern should be applied to the path
61	* of the primary file to yield a filename relative to the primary File:
62	*
63	* 1. If string ends with `?` character, remove the last `?` and mark
64	* the resulting secondary file as optional.
65	* 2. If string begins with one or more caret `^` characters, for each
66	* caret, remove the last file extension from the path (the last
67	* period `.` and all following characters). If there are no file
68	* extensions, the path is unchanged.
69	* 3. Append the remainder of the string to the end of the file path.
70	* * </BLOCKQUOTE>
71	*/
72
73	public Object getPattern() {
74	return this.pattern;	1✔
75	}
76
77	private Object required;
78
79	/**
80	* Getter for property <I>https://w3id.org/cwl/cwl#SecondaryFileSchema/required</I><BR>
81	* <BLOCKQUOTE>
82	* An implementation must not fail workflow execution if `required` is
83	* set to `false` and the expected secondary file does not exist.
84	* Default value for `required` field is `true` for secondary files on
85	* input and `false` for secondary files on output.
86	* * </BLOCKQUOTE>
87	*/
88
89	public Object getRequired() {
90	return this.required;	1✔
91	}
92
93	/**
94	* Used by {@link org.w3id.cwl.cwl1_1.utils.RootLoader} to construct instances of SecondaryFileSchemaImpl.
95	*
96	* @param __doc_ Document fragment to load this record object from (presumably a
97	{@link java.util.Map}).
98	* @param __baseUri_ Base URI to generate child document IDs against.
99	* @param __loadingOptions Context for loading URIs and populating objects.
100	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
101	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
102	* or validation of fields fails.
103	*/
104	public SecondaryFileSchemaImpl(
105	final Object __doc_,
106	final String __baseUri_,
107	LoadingOptions __loadingOptions,
108	final String __docRoot_) {
109	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
110	// Prefix plumbing variables with '__' to reduce likelihood of collision with
111	// generated names.
112	String __baseUri = __baseUri_;	1✔
113	String __docRoot = __docRoot_;	1✔
114	if (!(__doc_ instanceof java.util.Map)) {	1✔
115	throw new ValidationException("SecondaryFileSchemaImpl called on non-map");	×
116	}
117	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
118	final java.util.List<ValidationException> __errors =	1✔
119	new java.util.ArrayList<ValidationException>();
120	if (__loadingOptions != null) {	1✔
121	this.loadingOptions_ = __loadingOptions;	1✔
122	}
123	Object pattern;
124	try {
125	pattern =	1✔
126	LoaderInstances
127	.union_of_StringInstance_or_ExpressionLoader
128	.loadField(__doc.get("pattern"), __baseUri, __loadingOptions);	1✔
129	} catch (ValidationException e) {	×
130	pattern = null; // won't be used but prevents compiler from complaining.	×
131	final String __message = "the `pattern` field is not valid because:";	×
132	__errors.add(new ValidationException(__message, e));	×
133	}	1✔
134	Object required;
135
136	if (__doc.containsKey("required")) {	1✔
137	try {
138	required =	1✔
139	LoaderInstances
140	.union_of_NullInstance_or_BooleanInstance_or_ExpressionLoader
141	.loadField(__doc.get("required"), __baseUri, __loadingOptions);	1✔
142	} catch (ValidationException e) {	×
143	required = null; // won't be used but prevents compiler from complaining.	×
144	final String __message = "the `required` field is not valid because:";	×
145	__errors.add(new ValidationException(__message, e));	×
146	}	1✔
147
148	} else {
149	required = null;	1✔
150	}
151	if (!__errors.isEmpty()) {	1✔
152	throw new ValidationException("Trying 'RecordField'", __errors);	×
153	}
154	this.pattern = (Object) pattern;	1✔
155	this.required = (Object) required;	1✔
156	}	1✔
157	}

common-workflow-language / cwljava / #339

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