12954288577

Committed 24 Jan 2025 05:13PM UTC coverage: 84.833% (-0.1%) from 84.928%

Build # 12954288577

Build Type

Pull #2671

github

Committed by

web-flow

Commit Message

Merge d2ca87df5 into 560bd22bc

Pull Request Pull Request #2671: Adding methods to automatically apply results to existing Tally objects.

Run Details

53 of 65 new or added lines in 7 files covered. (81.54%)

59 existing lines in 20 files now uncovered.

50089 of 59044 relevant lines covered (84.83%)

34992387.74 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

76.49

/openmc/arithmetic.py

from collections.abc import Iterable
import copy

import numpy as np
import pandas as pd

import openmc
import openmc.checkvalue as cv
from .filter import _FILTER_TYPES


# Acceptable tally arithmetic binary operations
_TALLY_ARITHMETIC_OPS = {'+', '-', '*', '/', '^'}

# Acceptable tally aggregation operations
_TALLY_AGGREGATE_OPS = {'sum', 'avg'}


class CrossScore:
    """A special-purpose tally score used to encapsulate all combinations of two
    tally's scores as an outer product for tally arithmetic.

    Parameters
    ----------
    left_score : str or CrossScore
        The left score in the outer product
    right_score : str or CrossScore
        The right score in the outer product
    binary_op : str
        The tally arithmetic binary operator (e.g., '+', '-', etc.) used to
        combine two tally's scores with this CrossNuclide

    Attributes
    ----------
    left_score : str or CrossScore
        The left score in the outer product
    right_score : str or CrossScore
        The right score in the outer product
    binary_op : str
        The tally arithmetic binary operator (e.g., '+', '-', etc.) used to
        combine two tally's scores with this CrossScore

    """

    def __init__(self, left_score, right_score, binary_op):
        self.left_score = left_score
        self.right_score = right_score
        self.binary_op = binary_op

    def __hash__(self):
        return hash(repr(self))

    def __eq__(self, other):
        return str(other) == str(self)

    def __repr__(self):
        return f'({self.left_score} {self.binary_op} {self.right_score})'

    @property
    def left_score(self):
        return self._left_score

    @left_score.setter
    def left_score(self, left_score):
        cv.check_type('left_score', left_score,
                      (str, CrossScore, AggregateScore))
        self._left_score = left_score

    @property
    def right_score(self):
        return self._right_score

    @right_score.setter
    def right_score(self, right_score):
        cv.check_type('right_score', right_score,
                      (str, CrossScore, AggregateScore))
        self._right_score = right_score

    @property
    def binary_op(self):
        return self._binary_op

    @binary_op.setter
    def binary_op(self, binary_op):
        cv.check_type('binary_op', binary_op, str)
        cv.check_value('binary_op', binary_op, _TALLY_ARITHMETIC_OPS)
        self._binary_op = binary_op


class CrossNuclide:
    """A special-purpose nuclide used to encapsulate all combinations of two
    tally's nuclides as an outer product for tally arithmetic.

    Parameters
    ----------
    left_nuclide : str or CrossNuclide
        The left nuclide in the outer product
    right_nuclide : str or CrossNuclide
        The right nuclide in the outer product
    binary_op : str
        The tally arithmetic binary operator (e.g., '+', '-', etc.) used to
        combine two tally's nuclides with this CrossNuclide

    Attributes
    ----------
    left_nuclide : str or CrossNuclide
        The left nuclide in the outer product
    right_nuclide : str or CrossNuclide
        The right nuclide in the outer product
    binary_op : str
        The tally arithmetic binary operator (e.g., '+', '-', etc.) used to
        combine two tally's nuclides with this CrossNuclide

    """

    def __init__(self, left_nuclide, right_nuclide, binary_op):
        self.left_nuclide = left_nuclide
        self.right_nuclide = right_nuclide
        self.binary_op = binary_op

    def __hash__(self):
        return hash(repr(self))

    def __eq__(self, other):
        return str(other) == str(self)

    def __repr__(self):
        return self.name

    @property
    def left_nuclide(self):
        return self._left_nuclide

    @left_nuclide.setter
    def left_nuclide(self, left_nuclide):
        cv.check_type('left_nuclide', left_nuclide,
                      (str, CrossNuclide, AggregateNuclide))
        self._left_nuclide = left_nuclide

    @property
    def right_nuclide(self):
        return self._right_nuclide

    @right_nuclide.setter
    def right_nuclide(self, right_nuclide):
        cv.check_type('right_nuclide', right_nuclide,
                      (str, CrossNuclide, AggregateNuclide))
        self._right_nuclide = right_nuclide

    @property
    def binary_op(self):
        return self._binary_op

    @binary_op.setter
    def binary_op(self, binary_op):
        cv.check_type('binary_op', binary_op, str)
        cv.check_value('binary_op', binary_op, _TALLY_ARITHMETIC_OPS)
        self._binary_op = binary_op

    @property
    def name(self):
        return f'({self.left_nuclide} {self.binary_op} {self.right_nuclide})'


class CrossFilter:
    """A special-purpose filter used to encapsulate all combinations of two
    tally's filter bins as an outer product for tally arithmetic.

    Parameters
    ----------
    left_filter : openmc.Filter or CrossFilter
        The left filter in the outer product
    right_filter : openmc.Filter or CrossFilter
        The right filter in the outer product
    binary_op : str
        The tally arithmetic binary operator (e.g., '+', '-', etc.) used to
        combine two tally's filter bins with this CrossFilter

    Attributes
    ----------
    type : str
        The type of the crossfilter (e.g., 'energy / energy')
    left_filter : openmc.Filter or CrossFilter
        The left filter in the outer product
    right_filter : openmc.Filter or CrossFilter
        The right filter in the outer product
    binary_op : str
        The tally arithmetic binary operator (e.g., '+', '-', etc.) used to
        combine two tally's filter bins with this CrossFilter
    bins : dict of Iterable
        A dictionary of the bins from each filter keyed by the types of the
        left / right filters
    num_bins : Integral
        The number of filter bins (always 1 if aggregate_filter is defined)

    """

    def __init__(self, left_filter, right_filter, binary_op):
        self.left_filter = left_filter
        self.right_filter = right_filter
        self.binary_op = binary_op

    def __hash__(self):
        return hash((self.left_filter, self.right_filter))

    def __eq__(self, other):
        return str(other) == str(self)

    def __repr__(self):
        filter_bins = '({} {} {})'.format(self.left_filter.bins,
                                          self.binary_op,
                                          self.right_filter.bins)
        parts = [
            'CrossFilter',
            '{: <16}=\t{}'.format('\tType', self.type),
            '{: <16}=\t{}'.format('\tBins', filter_bins)
        ]
        return '\n'.join(parts)

    @property
    def left_filter(self):
        return self._left_filter

    @left_filter.setter
    def left_filter(self, left_filter):
        cv.check_type('left_filter', left_filter,
                      (openmc.Filter, CrossFilter, AggregateFilter))
        self._left_filter = left_filter

    @property
    def right_filter(self):
        return self._right_filter

    @right_filter.setter
    def right_filter(self, right_filter):
        cv.check_type('right_filter', right_filter,
                      (openmc.Filter, CrossFilter, AggregateFilter))
        self._right_filter = right_filter

    @property
    def binary_op(self):
        return self._binary_op

    @binary_op.setter
    def binary_op(self, binary_op):
        cv.check_type('binary_op', binary_op, str)
        cv.check_value('binary_op', binary_op, _TALLY_ARITHMETIC_OPS)
        self._binary_op = binary_op

    @property
    def type(self):
        left_type = self.left_filter.type
        right_type = self.right_filter.type
        return f'({left_type} {self.binary_op} {right_type})'

    @property
    def bins(self):
        return self._left_filter.bins, self._right_filter.bins

    @property
    def num_bins(self):
        if self.left_filter is not None and self.right_filter is not None:
            return self.left_filter.num_bins * self.right_filter.num_bins
        else:
            return 0

    def get_bin_index(self, filter_bin):
        """Returns the index in the CrossFilter for some bin.

        Parameters
        ----------
        filter_bin : 2-tuple
            A 2-tuple where each value corresponds to the bin of interest
            in the left and right filter, respectively. A bin is the integer
            ID for 'material', 'surface', 'cell', 'cellborn', and 'universe'
            Filters. The bin is an integer for the cell instance ID for
            'distribcell' Filters. The bin is a 2-tuple of floats for 'energy'
            and 'energyout' filters corresponding to the energy boundaries of
            the bin of interest.  The bin is a (x,y,z) 3-tuple for 'mesh'
            filters corresponding to the mesh cell of interest.

        Returns
        -------
        filter_index : Integral
             The index in the Tally data array for this filter bin.

        """

        left_index = self.left_filter.get_bin_index(filter_bin[0])
        right_index = self.right_filter.get_bin_index(filter_bin[0])
        filter_index = left_index * self.right_filter.num_bins + right_index
        return filter_index

    def get_pandas_dataframe(self, data_size, summary=None):
        """Builds a Pandas DataFrame for the CrossFilter's bins.

        This method constructs a Pandas DataFrame object for the CrossFilter
        with columns annotated by filter bin information. This is a helper
        method for the Tally.get_pandas_dataframe(...) method. This method
        recursively builds and concatenates Pandas DataFrames for the left
        and right filters and crossfilters.

        This capability has been tested for Pandas >=0.13.1. However, it is
        recommended to use v0.16 or newer versions of Pandas since this method
        uses Pandas' Multi-index functionality.

        Parameters
        ----------
        data_size : Integral
            The total number of bins in the tally corresponding to this filter
        summary : None or Summary
            An optional Summary object to be used to construct columns for
            distribcell tally filters (default is None). The geometric
            information in the Summary object is embedded into a Multi-index
            column with a geometric "path" to each distribcell instance.

        Returns
        -------
        pandas.DataFrame
            A Pandas DataFrame with columns of strings that characterize the
            crossfilter's bins. Each entry in the DataFrame will include one
            or more binary operations used to construct the crossfilter's bins.
            The number of rows in the DataFrame is the same as the total number
            of bins in the corresponding tally, with the filter bins
            appropriately tiled to map to the corresponding tally bins.

        See also
        --------
        Tally.get_pandas_dataframe(), Filter.get_pandas_dataframe()

        """

        # If left and right filters are identical, do not combine bins
        if self.left_filter == self.right_filter:
            df = self.left_filter.get_pandas_dataframe(data_size, summary)

        # If left and right filters are different, combine their bins
        else:
            left_df = self.left_filter.get_pandas_dataframe(data_size, summary)
            right_df = self.right_filter.get_pandas_dataframe(data_size, summary)
            left_df = left_df.astype(str)
            right_df = right_df.astype(str)
            df = f'({left_df} {self.binary_op} {right_df})'

        return df


class AggregateScore:
    """A special-purpose tally score used to encapsulate an aggregate of a
    subset or all of tally's scores for tally aggregation.

    Parameters
    ----------
    scores : Iterable of str or CrossScore
        The scores included in the aggregation
    aggregate_op : str
        The tally aggregation operator (e.g., 'sum', 'avg', etc.) used
        to aggregate across a tally's scores with this AggregateScore

    Attributes
    ----------
    scores : Iterable of str or CrossScore
        The scores included in the aggregation
    aggregate_op : str
        The tally aggregation operator (e.g., 'sum', 'avg', etc.) used
        to aggregate across a tally's scores with this AggregateScore

    """

    def __init__(self, scores=None, aggregate_op=None):

        self._scores = None
        self._aggregate_op = None

        if scores is not None:
            self.scores = scores
        if aggregate_op is not None:
            self.aggregate_op = aggregate_op

    def __hash__(self):
        return hash(repr(self))

    def __eq__(self, other):
        return str(other) == str(self)

    def __repr__(self):
        string = ', '.join(map(str, self.scores))
        string = f'{self.aggregate_op}({string})'
        return string

    @property
    def scores(self):
        return self._scores

    @scores.setter
    def scores(self, scores):
        cv.check_iterable_type('scores', scores, str)
        self._scores = scores

    @property
    def aggregate_op(self):
        return self._aggregate_op

    @aggregate_op.setter
    def aggregate_op(self, aggregate_op):
        cv.check_type('aggregate_op', aggregate_op, (str, CrossScore))
        cv.check_value('aggregate_op', aggregate_op, _TALLY_AGGREGATE_OPS)
        self._aggregate_op = aggregate_op

    @property
    def name(self):

        # Append each score in the aggregate to the string
        string = '(' + ', '.join(self.scores) + ')'
        return string


class AggregateNuclide:
    """A special-purpose tally nuclide used to encapsulate an aggregate of a
    subset or all of tally's nuclides for tally aggregation.

    Parameters
    ----------
    nuclides : Iterable of str or CrossNuclide
        The nuclides included in the aggregation
    aggregate_op : str
        The tally aggregation operator (e.g., 'sum', 'avg', etc.) used
        to aggregate across a tally's nuclides with this AggregateNuclide

    Attributes
    ----------
    nuclides : Iterable of str or CrossNuclide
        The nuclides included in the aggregation
    aggregate_op : str
        The tally aggregation operator (e.g., 'sum', 'avg', etc.) used
        to aggregate across a tally's nuclides with this AggregateNuclide

    """

    def __init__(self, nuclides=None, aggregate_op=None):

        self._nuclides = None
        self._aggregate_op = None

        if nuclides is not None:
            self.nuclides = nuclides
        if aggregate_op is not None:
            self.aggregate_op = aggregate_op

    def __hash__(self):
        return hash(repr(self))

    def __eq__(self, other):
        return str(other) == str(self)

    def __repr__(self):
        return f'{self.aggregate_op}{self.name}'

    @property
    def nuclides(self):
        return self._nuclides

    @nuclides.setter
    def nuclides(self, nuclides):
        cv.check_iterable_type('nuclides', nuclides, (str, CrossNuclide))
        self._nuclides = nuclides

    @property
    def aggregate_op(self):
        return self._aggregate_op

    @aggregate_op.setter
    def aggregate_op(self, aggregate_op):
        cv.check_type('aggregate_op', aggregate_op, str)
        cv.check_value('aggregate_op', aggregate_op, _TALLY_AGGREGATE_OPS)
        self._aggregate_op = aggregate_op

    @property
    def name(self):
        # Append each nuclide in the aggregate to the string
        names = [str(nuclide) for nuclide in self.nuclides]
        return '(' + ', '.join(map(str, names)) + ')'


class AggregateFilter:
    """A special-purpose tally filter used to encapsulate an aggregate of a
    subset or all of a tally filter's bins for tally aggregation.

    Parameters
    ----------
    aggregate_filter : openmc.Filter or CrossFilter
        The filter included in the aggregation
    bins : Iterable of tuple
        The filter bins included in the aggregation
    aggregate_op : str
        The tally aggregation operator (e.g., 'sum', 'avg', etc.) used
        to aggregate across a tally filter's bins with this AggregateFilter

    Attributes
    ----------
    type : str
        The type of the aggregatefilter (e.g., 'sum(energy)', 'sum(cell)')
    aggregate_filter : openmc.Filter
        The filter included in the aggregation
    aggregate_op : str
        The tally aggregation operator (e.g., 'sum', 'avg', etc.) used
        to aggregate across a tally filter's bins with this AggregateFilter
    bins : Iterable of tuple
        The filter bins included in the aggregation
    num_bins : Integral
        The number of filter bins (always 1 if aggregate_filter is defined)

    """

    def __init__(self, aggregate_filter, bins=None, aggregate_op=None):

        self._type = f'{aggregate_op}({aggregate_filter.short_name.lower()})'
        self._bins = None

        self._aggregate_filter = None
        self._aggregate_op = None

        self.aggregate_filter = aggregate_filter
        if bins is not None:
            self.bins = bins
        if aggregate_op is not None:
            self.aggregate_op = aggregate_op

    def __hash__(self):
        return hash(repr(self))

    def __eq__(self, other):
        return str(other) == str(self)

    def __gt__(self, other):
        if self.type != other.type:
            if self.aggregate_filter.type in _FILTER_TYPES and \
              other.aggregate_filter.type in _FILTER_TYPES:
                delta = _FILTER_TYPES.index(self.aggregate_filter.type) - \
                        _FILTER_TYPES.index(other.aggregate_filter.type)
                return delta > 0
            else:
                return False
        else:
            return False

    def __lt__(self, other):
        return not self > other

    def __repr__(self):
        parts = [
            'AggregateFilter',
            '{: <16}=\t{}'.format('\tType', self.type),
            '{: <16}=\t{}'.format('\tBins', self.bins)
        ]
        return '\n'.join(parts)

    @property
    def aggregate_filter(self):
        return self._aggregate_filter

    @aggregate_filter.setter
    def aggregate_filter(self, aggregate_filter):
        cv.check_type('aggregate_filter', aggregate_filter,
                      (openmc.Filter, CrossFilter))
        self._aggregate_filter = aggregate_filter

    @property
    def aggregate_op(self):
        return self._aggregate_op

    @aggregate_op.setter
    def aggregate_op(self, aggregate_op):
        cv.check_type('aggregate_op', aggregate_op, str)
        cv.check_value('aggregate_op', aggregate_op, _TALLY_AGGREGATE_OPS)
        self._aggregate_op = aggregate_op

    @property
    def type(self):
        return self._type

    @type.setter
    def type(self, filter_type):
        if filter_type not in _FILTER_TYPES:
            msg = f'Unable to set AggregateFilter type to "{filter_type}" ' \
                  'since it is not one of the supported types'
            raise ValueError(msg)

        self._type = filter_type

    @property
    def bins(self):
        return self._bins

    @bins.setter
    def bins(self, bins):
        cv.check_iterable_type('bins', bins, Iterable)
        self._bins = list(map(tuple, bins))

    @property
    def num_bins(self):
        return len(self.bins) if self.aggregate_filter else 0

    @property
    def shape(self):
        return (self.num_bins,)

    def get_bin_index(self, filter_bin):
        """Returns the index in the AggregateFilter for some bin.

        Parameters
        ----------
        filter_bin : Integral or tuple of Real
            A tuple of value(s) corresponding to the bin of interest in
            the aggregated filter. The bin is the integer ID for 'material',
            'surface', 'cell', 'cellborn', and 'universe' Filters. The bin
            is the integer cell instance ID for 'distribcell' Filters. The
            bin is a 2-tuple of floats for 'energy' and 'energyout' filters
            corresponding to the energy boundaries of the bin of interest.
            The bin is a (x,y,z) 3-tuple for 'mesh' filters corresponding to
            the mesh cell of interest.

        Returns
        -------
        filter_index : Integral
             The index in the Tally data array for this filter bin. For an
             AggregateTally the filter bin index is always unity.

        Raises
        ------
        ValueError
            When the filter_bin is not part of the aggregated filter's bins

        """

        if filter_bin not in self.bins:
            msg = ('Unable to get the bin index for AggregateFilter since '
                   f'"{filter_bin}" is not one of the bins')
            raise ValueError(msg)
        else:
            return self.bins.index(filter_bin)

    def get_pandas_dataframe(self, data_size, stride, summary=None, **kwargs):
        """Builds a Pandas DataFrame for the AggregateFilter's bins.

        This method constructs a Pandas DataFrame object for the AggregateFilter
        with columns annotated by filter bin information. This is a helper
        method for the Tally.get_pandas_dataframe(...) method.

        Parameters
        ----------
        data_size : int
            The total number of bins in the tally corresponding to this filter
        stride : int
            Stride in memory for the filter
        summary : None or Summary
            An optional Summary object to be used to construct columns for
            distribcell tally filters (default is None). NOTE: This parameter
            is not used by the AggregateFilter and simply mirrors the method
            signature for the CrossFilter.

        Returns
        -------
        pandas.DataFrame
            A Pandas DataFrame with columns of strings that characterize the
            aggregatefilter's bins. Each entry in the DataFrame will include
            one or more aggregation operations used to construct the
            aggregatefilter's bins. The number of rows in the DataFrame is the
            same as the total number of bins in the corresponding tally, with
            the filter bins appropriately tiled to map to the corresponding
            tally bins.

        See also
        --------
        Tally.get_pandas_dataframe(), Filter.get_pandas_dataframe(),
        CrossFilter.get_pandas_dataframe()

        """
        # Create NumPy array of the bin tuples for repeating / tiling
        filter_bins = np.empty(self.num_bins, dtype=tuple)
        for i, bin in enumerate(self.bins):
            filter_bins[i] = bin

        # Repeat and tile bins as needed for DataFrame
        filter_bins = np.repeat(filter_bins, stride)
        tile_factor = data_size / len(filter_bins)
        filter_bins = np.tile(filter_bins, tile_factor)

        # Create DataFrame with aggregated bins
        df = pd.DataFrame({self.type: filter_bins})
        return df

    def can_merge(self, other):
        """Determine if AggregateFilter can be merged with another.

        Parameters
        ----------
        other : AggregateFilter
            Filter to compare with

        Returns
        -------
        bool
            Whether the filter can be merged

        """

        if not isinstance(other, AggregateFilter):
            return False

        # Filters must be of the same type
        elif self.type != other.type:
            return False

        # None of the bins in this filter should match in the other filter
        return not any(b in other.bins for b in self.bins)

    def merge(self, other):
        """Merge this aggregatefilter with another.

        Parameters
        ----------
        other : AggregateFilter
            Filter to merge with

        Returns
        -------
        merged_filter : AggregateFilter
            Filter resulting from the merge

        """

        if not self.can_merge(other):
            msg = f'Unable to merge "{self.type}" with "{other.type}" filters'
            raise ValueError(msg)

        # Create deep copy of filter to return as merged filter
        merged_filter = copy.deepcopy(self)

        # Merge unique filter bins
        merged_bins = self.bins + other.bins

        # Sort energy bin edges
        if 'energy' in self.type:
            merged_bins = sorted(merged_bins)

        # Assign merged bins to merged filter
        merged_filter.bins = list(merged_bins)
        return merged_filter

openmc-dev / openmc / 12954288577

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source File
Press 'n' to go to next uncovered line, 'b' for previous