12294747514

Committed 12 Dec 2024 10:43AM UTC coverage: 85.003%. First build

Build # 12294747514

Build Type

Pull #4004

github

Committed by

web-flow

Commit Message

Merge 2f0d51093 into a5253152d

Pull Request Pull Request #4004: Add RML validation rules

Run Details

22 of 32 new or added lines in 5 files covered. (68.75%)

25659 of 30186 relevant lines covered (85.0%)

0.85 hits per line

Source File
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66.67

/cg/services/order_validation_service/workflows/rml/validation_service.py

from cg.services.order_validation_service.errors.order_errors import OrderError
from cg.services.order_validation_service.errors.sample_errors import SampleError
from cg.services.order_validation_service.errors.validation_errors import ValidationErrors
from cg.services.order_validation_service.model_validator.model_validator import ModelValidator
from cg.services.order_validation_service.order_validation_service import OrderValidationService
from cg.services.order_validation_service.response_mapper import create_order_validation_response
from cg.services.order_validation_service.utils import (
    apply_order_validation,
    apply_sample_validation,
)
from cg.services.order_validation_service.workflows.order_validation_rules import ORDER_RULES
from cg.services.order_validation_service.workflows.rml.models.order import RmlOrder
from cg.services.order_validation_service.workflows.rml.validation_rules import SAMPLE_RULES
from cg.store.store import Store


class RmlValidationService(OrderValidationService):

    def __init__(self, store: Store):
        self.store = store

    def validate(self, raw_order: dict) -> dict:
        errors: ValidationErrors = self._get_errors(raw_order)
        return create_order_validation_response(raw_order=raw_order, errors=errors)

    def _get_errors(self, raw_order: dict) -> ValidationErrors:
        order, field_errors = ModelValidator.validate(order=raw_order, model=RmlOrder)

        if not order:
            return field_errors

        order_errors: list[OrderError] = apply_order_validation(
            rules=ORDER_RULES,
            order=order,
            store=self.store,
        )
        sample_errors: list[SampleError] = apply_sample_validation(
            rules=SAMPLE_RULES,
            order=order,
            store=self.store,
        )

        return ValidationErrors(
            sample_errors=sample_errors,
            order_errors=order_errors,
        )

1	from cg.services.order_validation_service.errors.order_errors import OrderError	1✔
2	from cg.services.order_validation_service.errors.sample_errors import SampleError	1✔
3	from cg.services.order_validation_service.errors.validation_errors import ValidationErrors	1✔
4	from cg.services.order_validation_service.model_validator.model_validator import ModelValidator	1✔
5	from cg.services.order_validation_service.order_validation_service import OrderValidationService	1✔
6	from cg.services.order_validation_service.response_mapper import create_order_validation_response	1✔
7	from cg.services.order_validation_service.utils import (	1✔
8	apply_order_validation,
9	apply_sample_validation,
10	)
11	from cg.services.order_validation_service.workflows.order_validation_rules import ORDER_RULES	1✔
12	from cg.services.order_validation_service.workflows.rml.models.order import RmlOrder	1✔
13	from cg.services.order_validation_service.workflows.rml.validation_rules import SAMPLE_RULES	1✔
14	from cg.store.store import Store	1✔
15
16
17	class RmlValidationService(OrderValidationService):	1✔
18
19	def __init__(self, store: Store):	1✔
20	self.store = store	1✔
21
22	def validate(self, raw_order: dict) -> dict:	1✔
NEW 23	errors: ValidationErrors = self._get_errors(raw_order)	×
NEW 24	return create_order_validation_response(raw_order=raw_order, errors=errors)	×
25
26	def _get_errors(self, raw_order: dict) -> ValidationErrors:	1✔
NEW 27	order, field_errors = ModelValidator.validate(order=raw_order, model=RmlOrder)	×
28
NEW 29	if not order:	×
NEW 30	return field_errors	×
31
NEW 32	order_errors: list[OrderError] = apply_order_validation(	×
33	rules=ORDER_RULES,
34	order=order,
35	store=self.store,
36	)
NEW 37	sample_errors: list[SampleError] = apply_sample_validation(	×
38	rules=SAMPLE_RULES,
39	order=order,
40	store=self.store,
41	)
42
NEW 43	return ValidationErrors(	×
44	sample_errors=sample_errors,
45	order_errors=order_errors,
46	)

Clinical-Genomics / cg / 12294747514

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