12294344407

Committed 12 Dec 2024 10:19AM UTC coverage: 80.834%. First build

Build # 12294344407

Build Type

Pull #3936

github

Committed by

web-flow

Commit Message

Merge 82f219ba6 into ab9ded5a4

Pull Request Pull Request #3936: (Improve order flow) Minimal implementation FASTQSubmission

Run Details

34 of 52 new or added lines in 11 files covered. (65.38%)

13648 of 16884 relevant lines covered (80.83%)

1.5 hits per line

Source File
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81.82

/cg/services/orders/submitters/fastq_order_submitter.py

from cg.services.order_validation_service.workflows.fastq.models.order import FastqOrder
from cg.services.order_validation_service.workflows.fastq.validation_service import (
    FastqValidationService,
)
from cg.services.orders.store_order_services.store_fastq_order_service import StoreFastqOrderService
from cg.services.orders.submitters.order_submitter import OrderSubmitter


class FastqOrderSubmitter(OrderSubmitter):
    """Submitter for fastq orders."""

    def __init__(
        self,
        order_validation_service: FastqValidationService,
        order_store_service: StoreFastqOrderService,
    ):
        self.order_validation_service = order_validation_service
        self.order_store_service = order_store_service

    def submit_order(self, order: FastqOrder) -> dict:
        """Submit a fastq order."""
        result: dict = self.order_store_service.store_order(order)
        return result

1	from cg.services.order_validation_service.workflows.fastq.models.order import FastqOrder	1✔
2	from cg.services.order_validation_service.workflows.fastq.validation_service import (	1✔
3	FastqValidationService,
4	)
5	from cg.services.orders.store_order_services.store_fastq_order_service import StoreFastqOrderService	1✔
6	from cg.services.orders.submitters.order_submitter import OrderSubmitter	1✔
7
8
9	class FastqOrderSubmitter(OrderSubmitter):	1✔
10	"""Submitter for fastq orders."""
11
12	def __init__(	1✔
13	self,
14	order_validation_service: FastqValidationService,
15	order_store_service: StoreFastqOrderService,
16	):
17	self.order_validation_service = order_validation_service	1✔
18	self.order_store_service = order_store_service	1✔
19
20	def submit_order(self, order: FastqOrder) -> dict:	1✔
21	"""Submit a fastq order."""
NEW 22	result: dict = self.order_store_service.store_order(order)	×
23	return result	×

Clinical-Genomics / cg / 12294344407

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