11515075196

Committed 25 Oct 2024 08:54AM UTC coverage: 18.8% (-0.05%) from 18.845%

Build # 11515075196

Build Type

push

github

Committed by

web-flow

Commit Message

Merge pull request #667 from ProteinsWebTeam/reorganization_of_track_v2

Reorganization of tracks v2

Run Details

320 of 2106 branches covered (15.19%)

Branch coverage included in aggregate %.

4 of 20 new or added lines in 2 files covered. (20.0%)

1 existing line in 1 file now uncovered.

698 of 3309 relevant lines covered (21.09%)

4.23 hits per line

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61.36

/src/utils/entry-color/index.js

// @flow
import ColorHash from 'color-hash';

import config from 'config';

// default values for version 1.X of colorhash
/* eslint-disable no-magic-numbers */
const colorHash = new ColorHash({
  hash: 'bkdr',
  saturation: [0.65, 0.35, 0.5],
  lightness: [0.65, 0.35, 0.5],
});
/* eslint-enable no-magic-numbers */

/*:: export type ColorMode = 'ACCESSION' | 'MEMBER_DB' | 'DOMAIN_RELATIONSHIP'; */
/*:: type ColorModeMap = {[string]: ColorMode}; */

export const EntryColorMode /*: ColorModeMap */ = {
  ACCESSION: 'ACCESSION',
  MEMBER_DB: 'MEMBER_DB',
  DOMAIN_RELATIONSHIP: 'DOMAIN_RELATIONSHIP',
};

/*:: type Entry = {
  accession: string,
  source_database: string,
  parent?: Entry,
  integrated?: string
}; */

export const getTrackColor = (
  entry /*: Entry */,
  colorMode /*: ColorMode */,
) => {
  let acc;
  // eslint-disable-next-line default-case
  switch (colorMode) {
    case EntryColorMode.ACCESSION:
      acc = entry.accession.startsWith('residue:')
        ? entry.accession
            .split('residue:')[1]
            .toLowerCase()
            .split('')
            .reverse()
            .join('')
        : entry.accession.toLowerCase().split('').reverse().join('');
      return colorHash.hex(acc);
    case EntryColorMode.MEMBER_DB:
      return config.colors.get(entry.source_database);
    case EntryColorMode.DOMAIN_RELATIONSHIP:
      if (entry.source_database) {
        if (entry.source_database.toLowerCase() === 'interpro') {
          acc = entry.accession.split('').reverse().join('');
          return colorHash.hex(acc);
        }

        if (entry.source_database.toLowerCase() === 'mobidblt') {
          return colorHash.hex('MobiDB-lite: Consensus Disorder Prediction');
        }
      }
      if (entry.parent) {
        acc = entry.parent.accession.split('').reverse().join('');
        return colorHash.hex(acc);
      }

      if (entry.integrated) {
        acc = entry.integrated.split('').reverse().join('');
        return colorHash.hex(acc);
      }
  }
  return config.colors.get();
};

const HEX_REGEXP = /^#?([a-f\d]{2})([a-f\d]{2})([a-f\d]{2})$/i;

/*:: type RGB = {
  r: number,
  g: number,
  b: number
}; */

/**
 * Transforms hex string for color into rgb object
 * @param {string} hex hex string representing a color
 * @returns {{r: number, g: number, b: number}} RGB object containing number
 */
export const hexToRgb = (hex /*: string */) /*: ?RGB */ => {
  const [, r = 0, g = 0, b = 0] = hex.match(HEX_REGEXP) || [];
  return { r: parseInt(r, 16), g: parseInt(g, 16), b: parseInt(b, 16) };
};

1	// @flow
2	import ColorHash from 'color-hash';
3
4	import config from 'config';
5
6	// default values for version 1.X of colorhash
7	/* eslint-disable no-magic-numbers */
8	const colorHash = new ColorHash({	12✔
9	hash: 'bkdr',
10	saturation: [0.65, 0.35, 0.5],
11	lightness: [0.65, 0.35, 0.5],
12	});
13	/* eslint-enable no-magic-numbers */
14
15	/:: export type ColorMode = 'ACCESSION' \| 'MEMBER_DB' \| 'DOMAIN_RELATIONSHIP'; /
16	/:: type ColorModeMap = {[string]: ColorMode}; /
17
18	export const EntryColorMode /: ColorModeMap / = {	12✔
19	ACCESSION: 'ACCESSION',
20	MEMBER_DB: 'MEMBER_DB',
21	DOMAIN_RELATIONSHIP: 'DOMAIN_RELATIONSHIP',
22	};
23
24	/*:: type Entry = {
25	accession: string,
26	source_database: string,
27	parent?: Entry,
28	integrated?: string
29	}; */
30
31	export const getTrackColor = (	12✔
32	entry /: Entry /,
33	colorMode /: ColorMode /,
34	) => {
35	let acc;
36	// eslint-disable-next-line default-case
37	switch (colorMode) {	6✔
38	case EntryColorMode.ACCESSION:
39	acc = entry.accession.startsWith('residue:')	1!
40	? entry.accession
41	.split('residue:')[1]
42	.toLowerCase()
43	.split('')
44	.reverse()
45	.join('')
46	: entry.accession.toLowerCase().split('').reverse().join('');
47	return colorHash.hex(acc);	1✔
48	case EntryColorMode.MEMBER_DB:
49	return config.colors.get(entry.source_database);	1✔
50	case EntryColorMode.DOMAIN_RELATIONSHIP:
51	if (entry.source_database) {	1!
52	if (entry.source_database.toLowerCase() === 'interpro') {	1!
53	acc = entry.accession.split('').reverse().join('');	1✔
54	return colorHash.hex(acc);	1✔
55	}
56
NEW 57	if (entry.source_database.toLowerCase() === 'mobidblt') {	×
NEW 58	return colorHash.hex('MobiDB-lite: Consensus Disorder Prediction');	×
59	}
60	}
61	if (entry.parent) {	×
62	acc = entry.parent.accession.split('').reverse().join('');	×
63	return colorHash.hex(acc);	×
64	}
65
66	if (entry.integrated) {	×
67	acc = entry.integrated.split('').reverse().join('');	×
68	return colorHash.hex(acc);	×
69	}
70	}
71	return config.colors.get();	3✔
72	};
73
74	const HEX_REGEXP = /^#?([a-f\d]{2})([a-f\d]{2})([a-f\d]{2})$/i;	12✔
75
76	/*:: type RGB = {
77	r: number,
78	g: number,
79	b: number
80	}; */
81
82	/**
83	* Transforms hex string for color into rgb object
84	* @param {string} hex hex string representing a color
85	* @returns {{r: number, g: number, b: number}} RGB object containing number
86	*/
87	export const hexToRgb = (hex /: string /) /: ?RGB / => {	12✔
88	const [, r = 0, g = 0, b = 0] = hex.match(HEX_REGEXP) \|\| [];	10✔
89	return { r: parseInt(r, 16), g: parseInt(g, 16), b: parseInt(b, 16) };	10✔
90	};

ProteinsWebTeam / interpro7-client / 11515075196

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