10179980459

Committed 31 Jul 2024 12:14PM UTC coverage: 83.284%. First build

Build # 10179980459

Build Type

Pull #3487

github

Committed by

web-flow

Commit Message

Merge 2a64a106f into eec50e6da

Pull Request Pull Request #3487: add error handlers pacbio flow

Run Details

54 of 59 new or added lines in 10 files covered. (91.53%)

16766 of 20131 relevant lines covered (83.28%)

1.05 hits per line

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81.25

/cg/services/post_processing/error_handler.py

"""Module that holds the error handlers for the Post Processing service."""

import logging
from cg.exc import CgError

LOG = logging.getLogger(__name__)


def handle_post_processing_errors(to_except: tuple, to_raise):
    """Handle errors for the Post processing services."""

    def error_handling(fn):
        def wrapper(*args, **kwargs):
            try:
                return fn(*args, **kwargs)
            except to_except as error:
                LOG.debug(error)
                raise to_raise(error) from error
            except Exception as error:
                LOG.error(error)
                raise CgError(f"{error}") from error

        return wrapper

    return error_handling

1	"""Module that holds the error handlers for the Post Processing service."""
2
3	import logging	1✔
4	from cg.exc import CgError	1✔
5
6	LOG = logging.getLogger(__name__)	1✔
7
8
9	def handle_post_processing_errors(to_except: tuple, to_raise):	1✔
10	"""Handle errors for the Post processing services."""
11
12	def error_handling(fn):	1✔
13	def wrapper(args, *kwargs):	1✔
14	try:	1✔
15	return fn(args, *kwargs)	1✔
16	except to_except as error:	1✔
17	LOG.debug(error)	1✔
18	raise to_raise(error) from error	1✔
NEW 19	except Exception as error:	×
NEW 20	LOG.error(error)	×
NEW 21	raise CgError(f"{error}") from error	×
22
23	return wrapper	1✔
24
25	return error_handling	1✔

Clinical-Genomics / cg / 10179980459

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