10145474688

Committed 29 Jul 2024 01:41PM UTC coverage: 84.407%. First build

Build Type

github

Committed by

Commit Message

Merge e49212b01 into 36c50aa67

Run Details

4 of 18 new or added lines in 3 files covered. (22.22%)

21095 of 24992 relevant lines covered (84.41%)

0.84 hits per line

Source File
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0.0

/cg/services/post_processing/pacbio/post_processing_service.py

NEW 1	from cg.services.post_processing.abstract_classes import PostProcessingService	×
NEW 2	from cg.services.post_processing.pacbio.data_storage_service.pacbio_store_service import (	×
3	PacBioStoreService,
4	)
NEW 5	from cg.services.post_processing.pacbio.housekeeper_service.pacbio_houskeeper_service import (	×
6	PacBioHousekeeperService,
7	)
NEW 8	from cg.services.post_processing.pacbio.run_data_generator.pacbio_run_data_generator import (	×
9	PacBioRunDataGenerator,
10	)
NEW 11	from cg.services.post_processing.pacbio.run_data_generator.run_data import PacBioRunData	×
12
13
NEW 14	class PacBioPostProcessingService(PostProcessingService):	×
15	"""Service for handling post-processing of PacBio sequencing runs."""
16
NEW 17	def __init__(	×
18	self,
19	run_data_generator: PacBioRunDataGenerator,
20	hk_service: PacBioHousekeeperService,
21	store_service: PacBioStoreService,
22	):
NEW 23	self.run_data_generator: PacBioRunDataGenerator = run_data_generator	×
NEW 24	self.hk_service: PacBioHousekeeperService = hk_service	×
NEW 25	self.store_service: PacBioStoreService = store_service	×
26
NEW 27	def post_process(self, run_name: str, sequencing_dir: str):	×
NEW 28	run_data: PacBioRunData = self.run_data_generator.get_run_data(	×
29	run_name=run_name, sequencing_dir=sequencing_dir
30	)
NEW 31	self.store_service.store_post_processing_data(run_data=run_data)	×
NEW 32	self.hk_service.store_files_in_housekeeper(run_data=run_data)	×