9078923426

Committed 14 May 2024 11:59AM UTC coverage: 84.404%. First build

Build # 9078923426

Build Type

Pull #3226

github

Committed by

web-flow

Commit Message

Merge 2057b3112 into 79666bb67

Pull Request Pull Request #3226: add(validate pacbio transfer cli)

Run Details

77 of 106 new or added lines in 6 files covered. (72.64%)

19781 of 23436 relevant lines covered (84.4%)

0.84 hits per line

Source File
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83.33

/cg/cli/validate.py

import logging

import click
from cg.models.cg_config import CGConfig
from cg.services.validate_file_transfer_service.validate_pacbio_file_transfer_service import (
    ValidatePacbioFileTransferService,
)


LOG = logging.getLogger(__name__)


@click.group()
def validate():
    """Validation of processes in cg."""


@validate.command("pacbio-transfer")
@click.pass_obj
def validate_pacbio_transfer(context: CGConfig):
    """Validate that the PacBio transfer is correct."""
    validate_service = ValidatePacbioFileTransferService(config=context)
    validate_service.validate_all_transfer_done()

1	import logging	1✔
2
3	import click	1✔
4	from cg.models.cg_config import CGConfig	1✔
5	from cg.services.validate_file_transfer_service.validate_pacbio_file_transfer_service import (	1✔
6	ValidatePacbioFileTransferService,
7	)
8
9
10	LOG = logging.getLogger(__name__)	1✔
11
12
13	@click.group()	1✔
14	def validate():	1✔
15	"""Validation of processes in cg."""
16
17
18	@validate.command("pacbio-transfer")	1✔
19	@click.pass_obj	1✔
20	def validate_pacbio_transfer(context: CGConfig):	1✔
21	"""Validate that the PacBio transfer is correct."""
NEW 22	validate_service = ValidatePacbioFileTransferService(config=context)	×
NEW 23	validate_service.validate_all_transfer_done()	×

Clinical-Genomics / cg / 9078923426

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