8573091028

Committed 05 Apr 2024 04:49PM UTC coverage: 33.709% (-0.009%) from 33.718%

Build # 8573091028

Build Type

push

github

Committed by

aschroed

Commit Message

hotfix bugfix to support testing

Run Details

0 of 1 new or added line in 1 file covered. (0.0%)

1256 of 3726 relevant lines covered (33.71%)

1.35 hits per line

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/scripts/delete_item_or_fields.py

#!/usr/bin/env python3
'''
Given a list of item IDs or search result will:
    1. given one of more values in the '--fields' options delete those fields from the item
    2. if no fields option then set the status of the item(s) to deleted
Useful for deleting multiple fields or changing item status to deleted
NOTE: can use patch_field_for_many_items script to delete a single field for many items
but this script is more direct/flexible in some ways
'''
import sys
import argparse
from dcicutils.ff_utils import get_metadata, delete_metadata, delete_field
from functions import script_utils as scu


def get_args(args):
    parser = argparse.ArgumentParser(
        parents=[scu.create_input_arg_parser(), scu.create_ff_arg_parser()],
        formatter_class=argparse.RawDescriptionHelpFormatter,
    )
    parser.add_argument('--fields',
                        nargs='+',
                        help="With this option these fields will be removed from the items.")
    args = parser.parse_args(args)
    return args


def main():  # pragma: no cover
    args = get_args(sys.argv[1:])
    auth = scu.authenticate(key=args.key, keyfile=args.keyfile, env=args.env)
    dry_run = True
    if args.dbupdate:
        dry_run = False

    print('#', auth.get('server'))
    id_list = scu.get_item_ids_from_args(args.input, auth, args.search)
    del_flds = None
    if args.fields:
        fields = args.fields
        del_flds = ','.join(fields)
    problems = []
    for iid in id_list:
        try:
            get_metadata(iid, auth, add_on='frame=object')
        except Exception:
            problems.append(iid)
            continue

        if del_flds:
            # we have field(s) that we want to delete from provided items
            print(f"Will delete {del_flds} from {iid}")
            if dry_run:
                print("DRY RUN")
            else:
                try:
                    res = delete_field(iid, del_flds, auth)
                    status = res.get('status')
                    if status.lower() == 'success':
                        print(status)
                    else:
                        print(res)
                        problems.append(iid)
                except Exception as e:
                    print(f"PROBLEM: {e}")
                    problems.append(iid)
        else:
            # we want to set the status of the items in id_list to deleted
            print(f"Will set status of {iid} to DELETED")
            if dry_run:
                print("DRY RUN")
            else:
                try:
                    res = delete_metadata(iid, auth)
                    status = res.get('status')
                    if status.lower() == 'success':
                        print(status)
                    else:
                        print(res)
                        problems.append(iid)
                except Exception as e:
                    print(f"PROBLEM: {e}")
                    problems.append(iid)

    if problems:
        print('THERE WAS A PROBLEM DELETING METADATA FOR THE FOLLOWING:')
        for p in problems:
            print(p)


if __name__ == '__main__':
    main()

1	#!/usr/bin/env python3
2	'''	×
3	Given a list of item IDs or search result will:
4	1. given one of more values in the '--fields' options delete those fields from the item
5	2. if no fields option then set the status of the item(s) to deleted
6	Useful for deleting multiple fields or changing item status to deleted
7	NOTE: can use patch_field_for_many_items script to delete a single field for many items
8	but this script is more direct/flexible in some ways
9	'''
NEW 10	import sys	×
11	import argparse	×
12	from dcicutils.ff_utils import get_metadata, delete_metadata, delete_field	×
13	from functions import script_utils as scu	×
14
15
16	def get_args(args):	×
17	parser = argparse.ArgumentParser(	×
18	parents=[scu.create_input_arg_parser(), scu.create_ff_arg_parser()],
19	formatter_class=argparse.RawDescriptionHelpFormatter,
20	)
21	parser.add_argument('--fields',	×
22	nargs='+',
23	help="With this option these fields will be removed from the items.")
24	args = parser.parse_args(args)	×
25	return args	×
26
27
28	def main(): # pragma: no cover
29	args = get_args(sys.argv[1:])
30	auth = scu.authenticate(key=args.key, keyfile=args.keyfile, env=args.env)
31	dry_run = True
32	if args.dbupdate:
33	dry_run = False
34
35	print('#', auth.get('server'))
36	id_list = scu.get_item_ids_from_args(args.input, auth, args.search)
37	del_flds = None
38	if args.fields:
39	fields = args.fields
40	del_flds = ','.join(fields)
41	problems = []
42	for iid in id_list:
43	try:
44	get_metadata(iid, auth, add_on='frame=object')
45	except Exception:
46	problems.append(iid)
47	continue
48
49	if del_flds:
50	# we have field(s) that we want to delete from provided items
51	print(f"Will delete {del_flds} from {iid}")
52	if dry_run:
53	print("DRY RUN")
54	else:
55	try:
56	res = delete_field(iid, del_flds, auth)
57	status = res.get('status')
58	if status.lower() == 'success':
59	print(status)
60	else:
61	print(res)
62	problems.append(iid)
63	except Exception as e:
64	print(f"PROBLEM: {e}")
65	problems.append(iid)
66	else:
67	# we want to set the status of the items in id_list to deleted
68	print(f"Will set status of {iid} to DELETED")
69	if dry_run:
70	print("DRY RUN")
71	else:
72	try:
73	res = delete_metadata(iid, auth)
74	status = res.get('status')
75	if status.lower() == 'success':
76	print(status)
77	else:
78	print(res)
79	problems.append(iid)
80	except Exception as e:
81	print(f"PROBLEM: {e}")
82	problems.append(iid)
83
84	if problems:
85	print('THERE WAS A PROBLEM DELETING METADATA FOR THE FOLLOWING:')
86	for p in problems:
87	print(p)
88
89
90	if __name__ == '__main__':	×
91	main()	×

4dn-dcic / dcicwrangling / 8573091028

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