8249361983

Committed 12 Mar 2024 01:07PM UTC coverage: 0.0%. Remained the same

Build # 8249361983

Build Type

push

github

Committed by

web-flow

Commit Message

fix(reponse model in create request) (#58) (patch)

Fix response models for creating cases.

Run Details

0 of 10 new or added lines in 4 files covered. (0.0%)

3 existing lines in 1 file now uncovered.

0 of 1182 relevant lines covered (0.0%)

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0.0

/arnold/api/api_v1/api.py

from fastapi.responses import JSONResponse
from fastapi import FastAPI, Request, status
from pymongo.errors import BulkWriteError

from arnold.api.api_v1.endpoints import sample
from arnold.api.api_v1.endpoints import step
from arnold.api.api_v1.endpoints import trends
from arnold.api.api_v1.endpoints import flow_cell
from arnold.api.api_v1.endpoints import plots
from arnold.api.api_v1.endpoints import case
from fastapi.middleware.cors import CORSMiddleware


app = FastAPI()

app.add_middleware(
    CORSMiddleware,
    allow_origins=["*"],
    allow_credentials=True,
    allow_methods=["*"],
    allow_headers=["*"],
)


@app.exception_handler(BulkWriteError)
async def exception_handler(request: Request, exc: BulkWriteError) -> JSONResponse:
    return JSONResponse(
        status_code=status.HTTP_400_BAD_REQUEST, content=exc.details.get("writeErrors")
    )


@app.get("/")
async def root():
    return {"message": "Welcome to arnold"}


app.include_router(sample.router, prefix="/api/v1", tags=["sample"])
app.include_router(step.router, prefix="/api/v1", tags=["prep"])
app.include_router(trends.router, prefix="/api/v1", tags=["trends"])
app.include_router(flow_cell.router, prefix="/api/v1", tags=["flow_cell"])
app.include_router(plots.router, prefix="/api/v1", tags=["plots"])
app.include_router(case.router, prefix="/api/v1", tags=["case"])

1	from fastapi.responses import JSONResponse	×
2	from fastapi import FastAPI, Request, status	×
3	from pymongo.errors import BulkWriteError	×
4
5	from arnold.api.api_v1.endpoints import sample	×
6	from arnold.api.api_v1.endpoints import step	×
7	from arnold.api.api_v1.endpoints import trends	×
8	from arnold.api.api_v1.endpoints import flow_cell	×
9	from arnold.api.api_v1.endpoints import plots	×
10	from arnold.api.api_v1.endpoints import case	×
11	from fastapi.middleware.cors import CORSMiddleware	×
12
13
14	app = FastAPI()	×
15
16	app.add_middleware(	×
17	CORSMiddleware,
18	allow_origins=["*"],
19	allow_credentials=True,
20	allow_methods=["*"],
21	allow_headers=["*"],
22	)
23
24
25	@app.exception_handler(BulkWriteError)	×
26	async def exception_handler(request: Request, exc: BulkWriteError) -> JSONResponse:	×
27	return JSONResponse(	×
28	status_code=status.HTTP_400_BAD_REQUEST, content=exc.details.get("writeErrors")
29	)
30
31
32	@app.get("/")	×
33	async def root():	×
34	return {"message": "Welcome to arnold"}	×
35
36
37	app.include_router(sample.router, prefix="/api/v1", tags=["sample"])	×
38	app.include_router(step.router, prefix="/api/v1", tags=["prep"])	×
39	app.include_router(trends.router, prefix="/api/v1", tags=["trends"])	×
40	app.include_router(flow_cell.router, prefix="/api/v1", tags=["flow_cell"])	×
41	app.include_router(plots.router, prefix="/api/v1", tags=["plots"])	×
42	app.include_router(case.router, prefix="/api/v1", tags=["case"])	×

Clinical-Genomics / arnold / 8249361983

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