8169178037

Committed 06 Mar 2024 08:39AM UTC coverage: 0.106%. First build

Build # 8169178037

Build Type

Pull #79

github

Committed by

henrikstranneheim

Commit Message

Merge branch 'main' into add-black

# Conflicts:
#	requirements.txt

Pull Request Pull Request #79: feat(black)

Run Details

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/genotype_api/api/app.py

"""
Main functions for the genotype api

"""

from fastapi import FastAPI, status, Request
from fastapi.responses import JSONResponse
from fastapi.middleware.cors import CORSMiddleware

from genotype_api.config import security_settings
from genotype_api.database import create_db_and_tables
from genotype_api.api.endpoints import samples, snps, users, plates, analyses
from sqlalchemy.exc import NoResultFound

app = FastAPI(
    root_path=security_settings.api_root_path,
    root_path_in_servers=True,
    openapi_prefix=security_settings.api_root_path,
)
app.add_middleware(
    CORSMiddleware,
    allow_origins=["*"],
    allow_credentials=True,
    allow_methods=["*"],
    allow_headers=["*"],
)


@app.exception_handler(NoResultFound)
async def not_found_exception_handler(request: Request, exc: NoResultFound):
    return JSONResponse("Document not found", status_code=status.HTTP_404_NOT_FOUND)


@app.get("/")
def welcome():
    return {"hello": "Welcome to the genotype api"}


app.include_router(
    users.router,
    prefix="/users",
    tags=["users"],
    responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
)

app.include_router(
    samples.router,
    prefix="/samples",
    tags=["samples"],
    responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
)

app.include_router(
    plates.router,
    prefix="/plates",
    tags=["plates"],
    responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
)

app.include_router(
    snps.router,
    prefix="/snps",
    tags=["snps"],
    responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
)

app.include_router(
    analyses.router,
    prefix="/analyses",
    tags=["analyses"],
    responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
)


@app.on_event("startup")
def on_startup():
    create_db_and_tables()

1	"""
2	Main functions for the genotype api
3
4	"""
5
6	from fastapi import FastAPI, status, Request	×
7	from fastapi.responses import JSONResponse	×
8	from fastapi.middleware.cors import CORSMiddleware	×
9
10	from genotype_api.config import security_settings	×
11	from genotype_api.database import create_db_and_tables	×
12	from genotype_api.api.endpoints import samples, snps, users, plates, analyses	×
13	from sqlalchemy.exc import NoResultFound	×
14
15	app = FastAPI(	×
16	root_path=security_settings.api_root_path,
17	root_path_in_servers=True,
18	openapi_prefix=security_settings.api_root_path,
19	)
20	app.add_middleware(	×
21	CORSMiddleware,
22	allow_origins=["*"],
23	allow_credentials=True,
24	allow_methods=["*"],
25	allow_headers=["*"],
26	)
27
28
29	@app.exception_handler(NoResultFound)	×
30	async def not_found_exception_handler(request: Request, exc: NoResultFound):	×
31	return JSONResponse("Document not found", status_code=status.HTTP_404_NOT_FOUND)	×
32
33
34	@app.get("/")	×
35	def welcome():	×
36	return {"hello": "Welcome to the genotype api"}	×
37
38
39	app.include_router(	×
40	users.router,
41	prefix="/users",
42	tags=["users"],
43	responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
44	)
45
46	app.include_router(	×
47	samples.router,
48	prefix="/samples",
49	tags=["samples"],
50	responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
51	)
52
53	app.include_router(	×
54	plates.router,
55	prefix="/plates",
56	tags=["plates"],
57	responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
58	)
59
60	app.include_router(	×
61	snps.router,
62	prefix="/snps",
63	tags=["snps"],
64	responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
65	)
66
67	app.include_router(	×
68	analyses.router,
69	prefix="/analyses",
70	tags=["analyses"],
71	responses={status.HTTP_404_NOT_FOUND: {"description": "Not found"}},
72	)
73
74
75	@app.on_event("startup")	×
76	def on_startup():	×
77	create_db_and_tables()	×

Clinical-Genomics / genotype-api / 8169178037

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