7126237250

Committed 07 Dec 2023 09:28AM UTC coverage: 0.0%. Remained the same

Build # 7126237250

Build Type

push

github

Committed by

web-flow

Commit Message

add(case api endpoints) (#51) (patch)

## Added
Endpoinst to create and get cases to the arnold API

Run Details

0 of 27 new or added lines in 4 files covered. (0.0%)

1 existing line in 1 file now uncovered.

0 of 898 relevant lines covered (0.0%)

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0.0

/arnold/api/api_v1/endpoints/case.py

NEW 1	from fastapi import APIRouter, Body, Depends, status	×
NEW 2	from fastapi.responses import JSONResponse	×
3
NEW 4	from arnold.crud import create, read	×
NEW 5	from arnold.adapter.plugin import ArnoldAdapter	×
NEW 6	from arnold.settings import get_arnold_adapter	×
NEW 7	from arnold.models.database.case import Case	×
8
NEW 9	router = APIRouter()	×
10
11
NEW 12	@router.post(	×
13	"/case/",
14	response_description="Create a new case document",
15	status_code=status.HTTP_201_CREATED,
16	response_model=Case,
17	)
NEW 18	def create_case(	×
19	case: Case = Body(...),
20	adapter: ArnoldAdapter = Depends(get_arnold_adapter),
21	) -> JSONResponse:
22	"""Create a case document in the database."""
NEW 23	if read.case.get_case(case_id=case.id, adapter=adapter):	×
NEW 24	return JSONResponse(	×
25	status_code=status.HTTP_409_CONFLICT,
26	content="Case already in database.",
27	)
NEW 28	try:	×
NEW 29	create.create_case(case=case, adapter=adapter)	×
NEW 30	except Exception as error:	×
NEW 31	return JSONResponse(	×
32	status_code=status.HTTP_405_METHOD_NOT_ALLOWED, content=f"Error: {error}"
33	)
NEW 34	return JSONResponse(	×
35	status_code=status.HTTP_201_CREATED, content=f"Case with {case.id} was created."
36	)
37
38
NEW 39	@router.get(	×
40	"/case/{case_id}",
41	response_description="Get a case document.",
42	status_code=status.HTTP_200_OK,
43	response_model=Case,
44	)
NEW 45	def get_case(	×
46	case_id: str, adapter: ArnoldAdapter = Depends(get_arnold_adapter)
47	) -> Case \| JSONResponse:
48	"""Retrieve a case document from the database."""
NEW 49	try:	×
NEW 50	case: Case = read.case.get_case(case_id=case_id, adapter=adapter)	×
NEW 51	return case	×
NEW 52	except Exception as error:	×
NEW 53	return JSONResponse(	×
54	status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
55	content=f"Could not find entry with {case_id} in database. {error}",
56	)

Clinical-Genomics / arnold / 7126237250

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