7102454002

Committed 05 Dec 2023 02:52PM UTC coverage: 0.0%. Remained the same

Build # 7102454002

Build Type

push

github

Committed by

web-flow

Commit Message

Update to pydantic v2 (#47) (patch)

Added
Move the models to pydantic v2

add Codeowners for automatic reviewer tagging

Run Details

0 of 89 new or added lines in 5 files covered. (0.0%)

28 existing lines in 5 files now uncovered.

0 of 699 relevant lines covered (0.0%)

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0.0

/arnold/models/database/step.py

from typing import Optional
from pydantic import Field, BaseModel
from datetime import datetime

from pydantic import Extra


class Step(BaseModel):
    """Artifact related fields that are not udfs."""

    prep_id: str
    step_type: str
    sample_id: str
    workflow: str
    lims_step_name: Optional[str] = None
    id: str = Field(..., alias="_id")
    step_id: str
    well_position: Optional[str] = None
    artifact_name: Optional[str] = None
    container_name: Optional[str] = None
    container_id: Optional[str] = None
    container_type: Optional[str] = None
    index_name: Optional[str] = None
    nr_samples_in_pool: Optional[int] = None
    date_run: Optional[datetime] = None
    artifact_udfs: Optional[dict] = {}
    process_udfs: Optional[dict] = {}

    class Config:
        populate_by_name = True
        extra = Extra.allow

1	from typing import Optional	×
2	from pydantic import Field, BaseModel	×
3	from datetime import datetime	×
4
5	from pydantic import Extra	×
6
7
8	class Step(BaseModel):	×
9	"""Artifact related fields that are not udfs."""
10
11	prep_id: str	×
12	step_type: str	×
13	sample_id: str	×
14	workflow: str	×
NEW 15	lims_step_name: Optional[str] = None	×
16	id: str = Field(..., alias="_id")	×
17	step_id: str	×
NEW 18	well_position: Optional[str] = None	×
NEW 19	artifact_name: Optional[str] = None	×
NEW 20	container_name: Optional[str] = None	×
NEW 21	container_id: Optional[str] = None	×
NEW 22	container_type: Optional[str] = None	×
NEW 23	index_name: Optional[str] = None	×
NEW 24	nr_samples_in_pool: Optional[int] = None	×
NEW 25	date_run: Optional[datetime] = None	×
26	artifact_udfs: Optional[dict] = {}	×
27	process_udfs: Optional[dict] = {}	×
28
29	class Config:	×
NEW 30	populate_by_name = True	×
31	extra = Extra.allow	×

Clinical-Genomics / arnold / 7102454002

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