7102454002

Committed 05 Dec 2023 02:52PM UTC coverage: 0.0%. Remained the same

Build # 7102454002

Build Type

push

github

Committed by

web-flow

Commit Message

Update to pydantic v2 (#47) (patch)

Added
Move the models to pydantic v2

add Codeowners for automatic reviewer tagging

Run Details

0 of 89 new or added lines in 5 files covered. (0.0%)

28 existing lines in 5 files now uncovered.

0 of 699 relevant lines covered (0.0%)

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Source File
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0.0

/arnold/api/api_v1/api.py

from fastapi.responses import JSONResponse
from fastapi import FastAPI, Request, status
from pymongo.errors import BulkWriteError

from arnold.api.api_v1.endpoints import sample
from arnold.api.api_v1.endpoints import step
from arnold.api.api_v1.endpoints import trends
from arnold.api.api_v1.endpoints import flow_cell
from arnold.api.api_v1.endpoints import plots
from fastapi.middleware.cors import CORSMiddleware


app = FastAPI()

app.add_middleware(
    CORSMiddleware,
    allow_origins=["*"],
    allow_credentials=True,
    allow_methods=["*"],
    allow_headers=["*"],
)


@app.exception_handler(BulkWriteError)
async def exception_handler(request: Request, exc: BulkWriteError) -> JSONResponse:
    return JSONResponse(
        status_code=status.HTTP_400_BAD_REQUEST, content=exc.details.get("writeErrors")
    )


@app.get("/")
async def root():
    return {"message": "Welcome to arnold"}


app.include_router(sample.router, prefix="/api/v1", tags=["sample"])
app.include_router(step.router, prefix="/api/v1", tags=["prep"])
app.include_router(trends.router, prefix="/api/v1", tags=["trends"])
app.include_router(flow_cell.router, prefix="/api/v1", tags=["flow_cell"])
app.include_router(plots.router, prefix="/api/v1", tags=["plots"])

1	from fastapi.responses import JSONResponse	×
2	from fastapi import FastAPI, Request, status	×
3	from pymongo.errors import BulkWriteError	×
4
5	from arnold.api.api_v1.endpoints import sample	×
6	from arnold.api.api_v1.endpoints import step	×
7	from arnold.api.api_v1.endpoints import trends	×
8	from arnold.api.api_v1.endpoints import flow_cell	×
9	from arnold.api.api_v1.endpoints import plots	×
10	from fastapi.middleware.cors import CORSMiddleware	×
11
12
13	app = FastAPI()	×
14
15	app.add_middleware(	×
16	CORSMiddleware,
17	allow_origins=["*"],
18	allow_credentials=True,
19	allow_methods=["*"],
20	allow_headers=["*"],
21	)
22
23
24	@app.exception_handler(BulkWriteError)	×
25	async def exception_handler(request: Request, exc: BulkWriteError) -> JSONResponse:	×
26	return JSONResponse(	×
27	status_code=status.HTTP_400_BAD_REQUEST, content=exc.details.get("writeErrors")
28	)
29
30
31	@app.get("/")	×
32	async def root():	×
33	return {"message": "Welcome to arnold"}	×
34
35
36	app.include_router(sample.router, prefix="/api/v1", tags=["sample"])	×
37	app.include_router(step.router, prefix="/api/v1", tags=["prep"])	×
38	app.include_router(trends.router, prefix="/api/v1", tags=["trends"])	×
39	app.include_router(flow_cell.router, prefix="/api/v1", tags=["flow_cell"])	×
40	app.include_router(plots.router, prefix="/api/v1", tags=["plots"])	×

Clinical-Genomics / arnold / 7102454002

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