#3715

Committed 30 Nov 2023 08:55AM UTC coverage: 75.937% (+9.8%) from 66.106%

Build # #3715

Build Type

push

Committed by

Commit Message

Refactoring to reduce sonar code smell fixes (#4485)

---------

Signed-off-by: Gino Augustine <ginoaugustine@gmail.com>
Co-authored-by: Vladimir Kotal <vlada@kotalovi.cz>

Run Details

397 of 478 new or added lines in 51 files covered. (83.05%)

50 existing lines in 22 files now uncovered.

44494 of 58593 relevant lines covered (75.94%)

0.76 hits per line

Source File
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26.28

/opengrok-indexer/src/main/java/org/opengrok/indexer/web/SearchHelper.java

/*
 * CDDL HEADER START
 *
 * The contents of this file are subject to the terms of the
 * Common Development and Distribution License (the "License").
 * You may not use this file except in compliance with the License.
 *
 * See LICENSE.txt included in this distribution for the specific
 * language governing permissions and limitations under the License.
 *
 * When distributing Covered Code, include this CDDL HEADER in each
 * file and include the License file at LICENSE.txt.
 * If applicable, add the following below this CDDL HEADER, with the
 * fields enclosed by brackets "[]" replaced with your own identifying
 * information: Portions Copyright [yyyy] [name of copyright owner]
 *
 * CDDL HEADER END
 */

/*
 * Copyright (c) 2011, 2022, Oracle and/or its affiliates. All rights reserved.
 * Portions Copyright (c) 2011, Jens Elkner.
 * Portions Copyright (c) 2017, 2020, Chris Fraire <cfraire@me.com>.
 */
package org.opengrok.indexer.web;

import java.io.File;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import java.util.Optional;
import java.util.Set;
import java.util.SortedSet;
import java.util.TreeSet;
import java.util.logging.Level;
import java.util.logging.Logger;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import org.apache.lucene.document.Document;
import org.apache.lucene.index.IndexReader;
import org.apache.lucene.index.IndexableField;
import org.apache.lucene.index.LeafReaderContext;
import org.apache.lucene.index.ReaderUtil;
import org.apache.lucene.index.Term;
import org.apache.lucene.queryparser.classic.ParseException;
import org.apache.lucene.search.IndexSearcher;
import org.apache.lucene.search.Matches;
import org.apache.lucene.search.MatchesIterator;
import org.apache.lucene.search.MatchesUtils;
import org.apache.lucene.search.Query;
import org.apache.lucene.search.ScoreDoc;
import org.apache.lucene.search.ScoreMode;
import org.apache.lucene.search.Sort;
import org.apache.lucene.search.SortField;
import org.apache.lucene.search.TermQuery;
import org.apache.lucene.search.TopDocs;
import org.apache.lucene.search.TopFieldDocs;
import org.apache.lucene.search.Weight;
import org.apache.lucene.search.spell.DirectSpellChecker;
import org.apache.lucene.search.spell.SuggestMode;
import org.apache.lucene.search.spell.SuggestWord;
import org.opengrok.indexer.analysis.AbstractAnalyzer;
import org.opengrok.indexer.analysis.AnalyzerGuru;
import org.opengrok.indexer.analysis.CompatibleAnalyser;
import org.opengrok.indexer.analysis.Definitions;
import org.opengrok.indexer.configuration.Project;
import org.opengrok.indexer.configuration.RuntimeEnvironment;
import org.opengrok.indexer.configuration.SuperIndexSearcher;
import org.opengrok.indexer.index.IndexedSymlink;
import org.opengrok.indexer.logger.LoggerFactory;
import org.opengrok.indexer.search.QueryBuilder;
import org.opengrok.indexer.search.SettingsHelper;
import org.opengrok.indexer.search.Summarizer;
import org.opengrok.indexer.search.context.Context;
import org.opengrok.indexer.search.context.HistoryContext;
import org.opengrok.indexer.util.ForbiddenSymlinkException;

/**
 * Working set for a search basically to factor out/separate search related
 * complexity from UI design.
 *
 * @author Jens Elkner
 */
public class SearchHelper {

    private static final Logger LOGGER = LoggerFactory.getLogger(SearchHelper.class);

    private static final Pattern TAB_SPACE = Pattern.compile("[\t ]+");

    public static final String REQUEST_ATTR = "SearchHelper";

    /**
     * Default query parse error message prefix.
     */
    public static final String PARSE_ERROR_MSG = "Unable to parse your query: ";

    /**
     * Max number of words to suggest for spellcheck.
     */
    public static final int SPELLCHECK_SUGGEST_WORD_COUNT = 5;

    /**
     * data root: used to find the search index file.
     */
    private final File dataRoot;
    /**
     * context path, i.e. the applications' context path (usually /source) to use
     * when generating a redirect URL
     */
    private final String contextPath;

    /**
     * piggyback: the source root directory.
     */
    private final File sourceRoot;

    /**
     * piggyback: the <i>Eftar</i> file-reader to use.
     */
    private final EftarFileReader desc;
    /**
     * the result cursor start index, i.e. where to start displaying results
     */
    private final int start;
    /**
     * max. number of result items to show
     */
    private final int maxItems;
    /**
     * The QueryBuilder used to create the query.
     */
    private final QueryBuilder builder;
    /**
     * The order used for ordering query results.
     */
    private final SortOrder order;
    /**
     * Indicate whether this is search from a cross-reference. If {@code true}
     * {@link #executeQuery()} sets {@link #redirect} if certain conditions are
     * met.
     */
    private final boolean crossRefSearch;
    /**
     * As with {@link #crossRefSearch}, but here indicating either a
     * cross-reference search or a "full blown search".
     */
    private final boolean guiSearch;
    /**
     * if not {@code null}, the consumer should redirect the client to a
     * separate result page denoted by the value of this field. Automatically
     * set via {@link #prepareExec(SortedSet)} and {@link #executeQuery()}.
     */
    private String redirect;
    /**
     * A value indicating if redirection should be short-circuited when state or
     * query result would have indicated otherwise.
     */
    private final boolean noRedirect;
    /**
     * if not {@code null}, the UI should show this error message and stop
     * processing the search. Automatically set via
     * {@link #prepareExec(SortedSet)} and {@link #executeQuery()}.
     */
    private String errorMsg;
    /**
     * the reader used to open the index. Automatically set via
     * {@link #prepareExec(SortedSet)}.
     */
    private IndexReader reader;
    /**
     * the searcher used to open/search the index. Automatically set via {@link #prepareExec(SortedSet)}.
     */
    private IndexSearcher searcher;
    /**
     * If performing multi-project search, the indexSearcher objects will be
     * tracked by the indexSearcherMap so that they can be properly released
     * once the results are read.
     */
    private final ArrayList<SuperIndexSearcher> superIndexSearchers = new ArrayList<>();
    /**
     * List of docs which result from the executing the query.
     */
    private ScoreDoc[] hits;
    /**
     * Total number of hits.
     */
    private long totalHits;
    /**
     * the query created by {@link #builder} via
     * {@link #prepareExec(SortedSet)}.
     */
    private Query query;
    /**
     * the Lucene sort instruction based on {@link #order} created via
     * {@link #prepareExec(SortedSet)}.
     */
    protected Sort sort;
    /**
     * The spellchecker object.
     */
    private DirectSpellChecker checker;
    /**
     * projects to use to set up indexer searchers. Usually done via {@link #prepareExec(SortedSet)}.
     */
    private SortedSet<String> projects;
    /**
     * opengrok summary context. Usually created via {@link #prepareSummary()}.
     */
    private Context sourceContext = null;
    /**
     * result summarizer usually created via {@link #prepareSummary()}.
     */
    private Summarizer summarizer = null;
    /**
     * history context usually created via {@link #prepareSummary()}.
     */
    private HistoryContext historyContext;

    private SettingsHelper settingsHelper;

    public SearchHelper(int start, SortOrder sortOrder, File dataRoot, File sourceRoot, int maxItems,
                        EftarFileReader eftarFileReader, QueryBuilder queryBuilder, boolean crossRefSearch,
                        String contextPath, boolean guiSearch, boolean noRedirect) {
        this.start = start;
        this.order = sortOrder;
        this.dataRoot = dataRoot;
        this.sourceRoot = sourceRoot;
        this.maxItems = maxItems;
        this.desc = eftarFileReader;
        this.builder = queryBuilder;
        this.crossRefSearch = crossRefSearch;
        this.contextPath = contextPath;
        this.guiSearch = guiSearch;
        this.noRedirect = noRedirect;
    }

    public File getDataRoot() {
        return dataRoot;
    }

    public File getSourceRoot() {
        return sourceRoot;
    }

    public EftarFileReader getDesc() {
        return desc;
    }

    public QueryBuilder getBuilder() {
        return builder;
    }

    public String getContextPath() {
        return contextPath;
    }

    public void setRedirect(String redirect) {
        this.redirect = redirect;
    }

    public String getRedirect() {
        return redirect;
    }

    public String getErrorMsg() {
        return errorMsg;
    }

    public void setErrorMsg(String errorMsg) {
        this.errorMsg = errorMsg;
    }

    public IndexSearcher getSearcher() {
        return searcher;
    }

    public ScoreDoc[] getHits() {
        return hits;
    }

    public Query getQuery() {
        return query;
    }

    public long getTotalHits() {
        return totalHits;
    }

    public SortedSet<String> getProjects() {
        return projects;
    }

    public Context getSourceContext() {
        return sourceContext;
    }

    public int getMaxItems() {
        return maxItems;
    }

    public SortOrder getOrder() {
        return order;
    }

    public int getStart() {
        return start;
    }

    public Summarizer getSummarizer() {
        return summarizer;
    }

    public HistoryContext getHistoryContext() {
        return historyContext;
    }

    /**
     * User readable description for file types. Only those listed in
     * fileTypeDescription will be shown to the user.
     *
     * Returns a set of file type descriptions to be used for a search form.
     *
     * @return Set of tuples with file type and description.
     */
    public static Set<Map.Entry<String, String>> getFileTypeDescriptions() {
        return AnalyzerGuru.getfileTypeDescriptions().entrySet();
    }

    /**
     * Create the searcher to use w.r.t. currently set parameters and the given
     * projects. Does not produce any {@link #redirect} link. It also does
     * nothing if {@link #redirect} or {@link #errorMsg} have a none-{@code null} value.
     * <p>
     * Parameters which should be populated/set at this time:
     * <ul>
     * <li>{@link #builder}</li> <li>{@link #dataRoot}</li>
     * <li>{@link #order} (falls back to relevance if unset)</li>
     * </ul>
     * Populates/sets:
     * <ul>
     * <li>{@link #query}</li> <li>{@link #searcher}</li> <li>{@link #sort}</li>
     * <li>{@link #projects}</li> <li>{@link #errorMsg} if an error occurs</li>
     * </ul>
     *
     * @param projects project names. If empty, a no-project setup is assumed (i.e. DATA_ROOT/index will be used
     *                 instead of possible multiple DATA_ROOT/$project/index). If the set contains projects
     *                 not known in the configuration or projects not yet indexed an error will be returned
     *                 in {@link #errorMsg}.
     * @return this instance
     */
    public SearchHelper prepareExec(SortedSet<String> projects) {
        if (redirect != null || errorMsg != null) {
            return this;
        }

        settingsHelper = null;
        // the Query created by the QueryBuilder
        try {
            query = builder.build();
            if (projects == null) {
                errorMsg = "No project selected!";
                return this;
            }
            this.projects = projects;
            if (projects.isEmpty()) {
                // no project setup
                SuperIndexSearcher superIndexSearcher = RuntimeEnvironment.getInstance().getSuperIndexSearcher("");
                searcher = superIndexSearcher;
                superIndexSearchers.add(superIndexSearcher);
                reader = superIndexSearcher.getIndexReader();
            } else {
                // Check list of project names first to make sure all of them are valid and indexed.
                Set<String> invalidProjects = projects.stream().
                    filter(proj -> (Project.getByName(proj) == null)).
                    collect(Collectors.toSet());
                if (!invalidProjects.isEmpty()) {
                    errorMsg = "Project list contains invalid projects: " +
                        String.join(", ", invalidProjects);
                    return this;
                }
                Set<Project> notIndexedProjects =
                    projects.stream().
                    map(Project::getByName).
                    filter(proj -> !proj.isIndexed()).
                    collect(Collectors.toSet());
                if (!notIndexedProjects.isEmpty()) {
                    errorMsg = "Some of the projects to be searched are not indexed yet: " +
                        String.join(", ", notIndexedProjects.stream().
                        map(Project::getName).
                        collect(Collectors.toSet()));
                    return this;
                }

                // We use MultiReader even for single project. This should not matter
                // given that MultiReader is just a cheap wrapper around set of IndexReader objects.
                reader = RuntimeEnvironment.getInstance().getMultiReader(projects, superIndexSearchers);
                if (reader != null) {
                    searcher = RuntimeEnvironment.getInstance().getIndexSearcherFactory().newSearcher(reader);
                } else {
                    errorMsg = "Failed to initialize search. Check the index";
                    if (!projects.isEmpty()) {
                        errorMsg += " for projects: " + String.join(", ", projects);
                    }
                    return this;
                }
            }

            // TODO check if below is somehow reusing sessions so we don't
            // requery again and again, I guess 2min timeout sessions could be
            // useful, since you click on the next page within 2mins, if not,
            // then wait ;)
            // Most probably they are not reused. SearcherLifetimeManager might help here.
            switch (order) {
                case LASTMODIFIED:
                    sort = new Sort(new SortField(QueryBuilder.DATE, SortField.Type.STRING, true));
                    break;
                case BY_PATH:
                    sort = new Sort(new SortField(QueryBuilder.FULLPATH, SortField.Type.STRING));
                    break;
                default:
                    sort = Sort.RELEVANCE;
                    break;
            }
            checker = new DirectSpellChecker();
        } catch (ParseException e) {
            errorMsg = PARSE_ERROR_MSG + e.getMessage();
        } catch (FileNotFoundException e) {
            errorMsg = "Index database not found. Check the index";
            if (!projects.isEmpty()) {
                errorMsg += " for projects: " + String.join(", ", projects);
            }
            errorMsg += "; " + e.getMessage();
        } catch (IOException e) {
            errorMsg = e.getMessage();
        }
        return this;
    }

    /**
     * Calls {@link #prepareExec(java.util.SortedSet)} with a single-element
     * set for {@code project}.
     * @param project a defined instance
     * @return this instance
     */
    public SearchHelper prepareExec(Project project) {
        SortedSet<String> oneProject = new TreeSet<>();
        oneProject.add(project.getName());
        return prepareExec(oneProject);
    }

    /**
     * Start the search prepared by {@link #prepareExec(SortedSet)}. It does
     * nothing if {@link #redirect} or {@link #errorMsg} have a
     * none-{@code null} value.
     * <p>
     * Parameters which should be populated/set at this time: <ul> <li>all
     * fields required for and populated by
     * {@link #prepareExec(SortedSet)})</li> <li>{@link #start} (default:
     * 0)</li> <li>{@link #maxItems} (default: 0)</li>
     * <li>{@link #crossRefSearch} (default: false)</li> </ul> Populates/sets:
     * <ul> <li>{@link #hits} (see {@link TopFieldDocs#scoreDocs})</li>
     * <li>{@link #totalHits} (see {@link TopFieldDocs#totalHits})</li>
     * <li>{@link #contextPath}</li> <li>{@link #errorMsg} if an error
     * occurs</li> <li>{@link #redirect} if certain conditions are met</li>
     * </ul>
     *
     * @return this instance
     */
    public SearchHelper executeQuery() {
        if (redirect != null || errorMsg != null) {
            return this;
        }
        try {
            TopFieldDocs fdocs = searcher.search(query, start + maxItems, sort);
            totalHits = fdocs.totalHits.value;
            hits = fdocs.scoreDocs;

            /*
             * Determine if possibly a single-result redirect to xref is
             * eligible and applicable. If history query is active, then nope.
             */
            if (!noRedirect && hits != null && hits.length == 1 && builder.getHist() == null) {
                int docID = hits[0].doc;
                if (crossRefSearch && query instanceof TermQuery && builder.getDefs() != null) {
                    maybeRedirectToDefinition(docID, (TermQuery) query);
                } else if (guiSearch) {
                    if (builder.isPathSearch()) {
                        redirectToFile(docID);
                    } else {
                        maybeRedirectToMatchOffset(docID, builder.getContextFields());
                    }
                }
            }
        } catch (IOException | ClassNotFoundException e) {
            errorMsg = e.getMessage();
        }
        return this;
    }

    private void maybeRedirectToDefinition(int docID, TermQuery termQuery)
            throws IOException, ClassNotFoundException {
        // Bug #3900: Check if this is a search for a single term, and that
        // term is a definition. If that's the case, and we only have one match,
        // we'll generate a direct link instead of a listing.
        //
        // Attempt to create a direct link to the definition if we search for
        // one single definition term AND we have exactly one match AND there
        // is only one definition of that symbol in the document that matches.
        Document doc = searcher.storedFields().document(docID);
        IndexableField tagsField = doc.getField(QueryBuilder.TAGS);
        if (tagsField != null) {
            byte[] rawTags = tagsField.binaryValue().bytes;
            Definitions tags = Definitions.deserialize(rawTags);
            String symbol = termQuery.getTerm().text();
            if (tags.occurrences(symbol) == 1) {
                String anchor = Util.uriEncode(symbol);
                redirect = contextPath + Prefix.XREF_P
                        + Util.uriEncodePath(doc.get(QueryBuilder.PATH))
                        + '?' + QueryParameters.FRAGMENT_IDENTIFIER_PARAM_EQ + anchor
                        + '#' + anchor;
            }
        }
    }

    private void maybeRedirectToMatchOffset(int docID, List<String> contextFields)
            throws IOException {
        /*
         * Only PLAIN files might redirect to a file offset, since an offset
         * must be subsequently converted to a line number and that is tractable
         * only from plain text.
         */
        Document doc = searcher.storedFields().document(docID);
        String genre = doc.get(QueryBuilder.T);
        if (!AbstractAnalyzer.Genre.PLAIN.typeName().equals(genre)) {
            return;
        }

        List<LeafReaderContext> leaves = reader.leaves();
        int subIndex = ReaderUtil.subIndex(docID, leaves);
        LeafReaderContext leaf = leaves.get(subIndex);

        Query rewritten = query.rewrite(searcher);
        Weight weight = rewritten.createWeight(searcher, ScoreMode.COMPLETE_NO_SCORES, 1);
        Matches matches = weight.matches(leaf, docID - leaf.docBase); // Adjust docID
        if (matches != null && matches != MatchesUtils.MATCH_WITH_NO_TERMS) {
            int matchCount = 0;
            int offset = -1;
            for (String field : contextFields) {
                MatchesIterator matchesIterator = matches.getMatches(field);
                while (matchesIterator.next()) {
                    if (matchesIterator.startOffset() >= 0) {
                        // Abort if there is more than a single match offset.
                        if (++matchCount > 1) {
                            return;
                        }
                        offset = matchesIterator.startOffset();
                    }
                }
            }
            if (offset >= 0) {
                redirect = contextPath + Prefix.XREF_P
                        + Util.uriEncodePath(doc.get(QueryBuilder.PATH))
                        + '?' + QueryParameters.MATCH_OFFSET_PARAM_EQ + offset;
            }
        }
    }

    private void redirectToFile(int docID) throws IOException {
        Document doc = searcher.storedFields().document(docID);
        redirect = contextPath + Prefix.XREF_P + Util.uriEncodePath(doc.get(QueryBuilder.PATH));
    }

    private void getSuggestion(Term term, IndexReader ir,
            List<String> result) throws IOException {
        if (term == null) {
            return;
        }
        String[] toks = TAB_SPACE.split(term.text(), 0);
        for (String tok : toks) {
            //TODO below seems to be case insensitive ... for refs/defs this is bad
            SuggestWord[] words = checker.suggestSimilar(new Term(term.field(), tok),
                SPELLCHECK_SUGGEST_WORD_COUNT, ir, SuggestMode.SUGGEST_ALWAYS);
            for (SuggestWord w : words) {
                result.add(w.string);
            }
        }
    }

    /**
     * If a search did not return a hit, one may use this method to obtain
     * suggestions for a new search.
     *
     * <p>
     * Parameters which should be populated/set at this time: <ul>
     * <li>{@link #projects}</li> <li>{@link #dataRoot}</li>
     * <li>{@link #builder}</li> </ul>
     *
     * @return a possible empty list of suggestions.
     */
    public List<Suggestion> getSuggestions() {
        if (projects == null) {
            return new ArrayList<>(0);
        }

        boolean emptyProjects = false;
        String[] projectNames;
        if (projects.isEmpty()) {
            projectNames = new String[]{"/"};
            emptyProjects = true;
        } else if (projects.size() == 1) {
            projectNames = new String[]{projects.first()};
        } else {
            projectNames = new String[projects.size()];
            int ii = 0;
            for (String proj : projects) {
                projectNames[ii++] = proj;
            }
        }

        List<Suggestion> res = new ArrayList<>();
        List<String> dummy = new ArrayList<>();
        IndexReader ir = null;
        Term t;
        for (String projectName : projectNames) {
            Suggestion suggestion = new Suggestion(projectName);
            try {
                SuperIndexSearcher superIndexSearcher;
                if (emptyProjects) {
                    superIndexSearcher = RuntimeEnvironment.getInstance().getSuperIndexSearcher("");
                } else {
                    superIndexSearcher = RuntimeEnvironment.getInstance().getSuperIndexSearcher(projectName);
                }
                superIndexSearchers.add(superIndexSearcher);
                ir = superIndexSearcher.getIndexReader();

                if (builder.getFreetext() != null && !builder.getFreetext().isEmpty()) {
                    t = new Term(QueryBuilder.FULL, builder.getFreetext());
                    getSuggestion(t, ir, dummy);
                    suggestion.setFreetext(dummy.toArray(new String[0]));
                    dummy.clear();
                }
                if (builder.getRefs() != null && !builder.getRefs().isEmpty()) {
                    t = new Term(QueryBuilder.REFS, builder.getRefs());
                    getSuggestion(t, ir, dummy);
                    suggestion.setRefs(dummy.toArray(new String[0]));
                    dummy.clear();
                }
                if (builder.getDefs() != null && !builder.getDefs().isEmpty()) {
                    t = new Term(QueryBuilder.DEFS, builder.getDefs());
                    getSuggestion(t, ir, dummy);
                    suggestion.setDefs(dummy.toArray(new String[0]));
                    dummy.clear();
                }
                //TODO suggest also for path and history?
                if (suggestion.isUsable()) {
                    res.add(suggestion);
                }
            } catch (IOException e) {
                LOGGER.log(Level.WARNING,
                        String.format("Got exception while getting spelling suggestions for project %s:", projectName),
                        e);
            }
        }

        return res;
    }

    /**
     * Prepare the fields to support printing a full blown summary. Does nothing
     * if {@link #redirect} or {@link #errorMsg} have a none-{@code null} value.
     *
     * <p>
     * Parameters which should be populated/set at this time: <ul>
     * <li>{@link #query}</li> <li>{@link #builder}</li> </ul> Populates/sets:
     * Otherwise the following fields are set (includes {@code null}): <ul>
     * <li>{@link #sourceContext}</li> <li>{@link #summarizer}</li>
     * <li>{@link #historyContext}</li> </ul>
     *
     * @return this instance.
     */
    public SearchHelper prepareSummary() {
        if (redirect != null || errorMsg != null) {
            return this;
        }
        try {
            sourceContext = new Context(query, builder);
            summarizer = new Summarizer(query, new CompatibleAnalyser());
        } catch (Exception e) {
            LOGGER.log(Level.WARNING, "Summarizer: {0}", e.getMessage());
        }
        try {
            historyContext = new HistoryContext(query);
        } catch (Exception e) {
            LOGGER.log(Level.WARNING, "HistoryContext: {0}", e.getMessage());
        }
        return this;
    }

    /**
     * Free any resources associated with this helper.
     */
    public void destroy() {
        for (SuperIndexSearcher superIndexSearcher : superIndexSearchers) {
            try {
                superIndexSearcher.release();
            } catch (IOException ex) {
                LOGGER.log(Level.WARNING, "cannot release SuperIndexSearcher", ex);
            }
        }
    }

    /**
     * Searches for a document for a single file from the index.
     * @param file the file whose definitions to find
     * @return {@link ScoreDoc#doc} or -1 if it could not be found
     * @throws IOException if an error happens when accessing the index
     * @throws ParseException if an error happens when building the Lucene query
     */
    public int searchSingle(File file) throws IOException,
            ParseException {

        RuntimeEnvironment env = RuntimeEnvironment.getInstance();
        String path;
        try {
            path = env.getPathRelativeToSourceRoot(file);
        } catch (ForbiddenSymlinkException e) {
            LOGGER.log(Level.FINER, e.getMessage());
            return -1;
        }
        //sanitize windows path delimiters
        //in order not to conflict with Lucene escape character
        path = path.replace("\\", "/");

        QueryBuilder singleBuilder = new QueryBuilder();
        if (builder != null) {
            singleBuilder.reset(builder);
        }
        query = singleBuilder.setPath(path).build();

        TopDocs top = searcher.search(query, 1);
        if (top.totalHits.value == 0) {
            return -1;
        }

        int docID = top.scoreDocs[0].doc;
        Document doc = searcher.storedFields().document(docID);

        String foundPath = doc.get(QueryBuilder.PATH);
        // Only use the result if PATH matches exactly.
        if (!path.equals(foundPath)) {
            return -1;
        }

        return docID;
    }

    /**
     * Gets the persisted tabSize via {@link SettingsHelper} for the active
     * reader.
     * @param proj a defined instance or {@code null} if no project is active
     * @return tabSize
     * @throws IOException if an I/O error occurs querying the active reader
     */
    public int getTabSize(Project proj) throws IOException {
        ensureSettingsHelper();
        return settingsHelper.getTabSize(proj);
    }

    /**
     * Determines if there is a prime equivalent to {@code relativePath}
     * according to indexed symlinks and translate (or not) accordingly.
     * @param project the project name or empty string if projects are not used
     * @param relativePath an OpenGrok-style (i.e. starting with a file
     *                     separator) relative path
     * @return a prime relative path or just {@code relativePath} if no prime
     * is matched
     */
    public String getPrimeRelativePath(String project, String relativePath)
            throws IOException, ForbiddenSymlinkException {

        RuntimeEnvironment env = RuntimeEnvironment.getInstance();
        String nonEmptySourceRoot = Optional.ofNullable(env.getSourceRootPath())
                .orElseThrow(() -> new IllegalStateException("sourceRoot is not defined"));

        File absolute = new File(nonEmptySourceRoot + relativePath);

        ensureSettingsHelper();
        settingsHelper.getSettings(project);
        Map<String, IndexedSymlink> indexedSymlinks = settingsHelper.getSymlinks(project);
        String canonical = absolute.getCanonicalFile().getPath();
        for (IndexedSymlink entry : indexedSymlinks.values()) {
            if (canonical.equals(entry.getCanonical())) {
                if (absolute.getPath().equals(entry.getAbsolute())) {
                    return relativePath;
                }
                Path newAbsolute = Paths.get(entry.getAbsolute());
                return env.getPathRelativeToSourceRoot(newAbsolute.toFile());
            } else if (canonical.startsWith(entry.getCanonicalSeparated())) {
                Path newAbsolute = Paths.get(entry.getAbsolute(),
                        canonical.substring(entry.getCanonicalSeparated().length()));
                return env.getPathRelativeToSourceRoot(newAbsolute.toFile());
            }
        }

        return relativePath;
    }

    private void ensureSettingsHelper() {
        if (settingsHelper == null) {
            settingsHelper = new SettingsHelper(reader);
        }
    }
}

oracle / opengrok / #3715

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