7029770837

Committed 29 Nov 2023 08:15AM UTC coverage: 93.327% (-0.6%) from 93.924%

Build # 7029770837

Build Type

Pull #307

github

Committed by

1uc

Commit Message

Implement `Hdf5Reader` API and default.

This commit introduces the API for an Hdf5Reader. This reader abstracts the
process of opening HDF5 files, and reading an `libsonata.Selection` from a
dataset.

The default reader calls the existing `_readSelection`.

Pull Request Pull Request #307: Inject dataset reading via `Hdf5Reader`.

Run Details

80 of 95 new or added lines in 10 files covered. (84.21%)

7 existing lines in 2 files now uncovered.

1888 of 2023 relevant lines covered (93.33%)

80.43 hits per line

Source File
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57.14

/src/hdf5_reader.cpp

#include <bbp/sonata/hdf5_reader.h>

#include "hdf5_reader.hpp"

namespace bbp {
namespace sonata {


Hdf5Reader::Hdf5Reader()
    : impl(std::make_shared<
           Hdf5PluginDefault<Hdf5Reader::supported_1D_types, supported_2D_types>>()) {}

Hdf5Reader::Hdf5Reader(
    std::shared_ptr<Hdf5PluginInterface<supported_1D_types, supported_2D_types>> impl)
    : impl(std::move(impl)) {}

HighFive::File Hdf5Reader::openFile(const std::string& filename) const {
    return impl->openFile(filename);
}

}  // namespace sonata
}  // namespace bbp

1	#include <bbp/sonata/hdf5_reader.h>
2
3	#include "hdf5_reader.hpp"
4
5	namespace bbp {
6	namespace sonata {
7
8
9	Hdf5Reader::Hdf5Reader()	74✔
10	: impl(std::make_shared<
11	Hdf5PluginDefault<Hdf5Reader::supported_1D_types, supported_2D_types>>()) {}	74✔
12
NEW 13	Hdf5Reader::Hdf5Reader(	×
NEW 14	std::shared_ptr<Hdf5PluginInterface<supported_1D_types, supported_2D_types>> impl)	×
NEW 15	: impl(std::move(impl)) {}	×
16
17	HighFive::File Hdf5Reader::openFile(const std::string& filename) const {	70✔
18	return impl->openFile(filename);	70✔
19	}
20
21	} // namespace sonata
22	} // namespace bbp

BlueBrain / libsonata / 7029770837

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