4845620836

Build # 4845620836

Build Type

github

Committed by GitHub

Commit Message

Merge fd7b05c7e into 39b2bbebd

Pull Request Pull Request #77: Fix dependency error in daily testing

Run Details

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91.82

/pypots/tests/test_cli.py

"""
Test cases for the functions and classes in package `pypots.cli`.
"""

# Created by Wenjie Du <wenjay.du@gmail.com>
# License: GLP-v3

import os
import threading
import unittest
from argparse import Namespace
from copy import copy

import pytest

from pypots.cli.dev import dev_command_factory
from pypots.cli.doc import doc_command_factory
from pypots.cli.env import env_command_factory
from pypots.utils.logging import logger

PROJECT_ROOT_DIR = os.path.abspath(os.path.join(os.path.abspath(__file__), "../../.."))


def callback_func():
    raise TimeoutError("Time out.")


def time_out(interval, callback):
    def decorator(func):
        def wrapper(*args, **kwargs):
            t = threading.Thread(target=func, args=args, kwargs=kwargs)
            t.setDaemon(True)
            t.start()
            t.join(interval)  # wait for interval seconds
            if t.is_alive():
                return threading.Timer(0, callback).start()  # invoke callback()
            else:
                return

        return wrapper

    return decorator


class TestPyPOTSCLIDev(unittest.TestCase):
    # set up the default arguments
    default_arguments = {
        "build": False,
        "cleanup": False,
        "run_tests": False,
        "k": None,
        "show_coverage": False,
        "lint_code": False,
    }
    # `pypots-cli dev` must run under the project root dir
    os.chdir(PROJECT_ROOT_DIR)

    @pytest.mark.xdist_group(name="cli-dev")
    def test_0_build(self):
        arguments = copy(self.default_arguments)
        arguments["build"] = True
        args = Namespace(**arguments)
        dev_command_factory(args).run()

    @pytest.mark.xdist_group(name="cli-dev")
    def test_1_run_tests(self):
        arguments = copy(self.default_arguments)
        arguments["run_tests"] = True
        arguments["k"] = "try_to_find_a_non_existing_test_case"
        args = Namespace(**arguments)
        try:
            dev_command_factory(args).run()
        except RuntimeError:  # try to find a non-existing test case, so RuntimeError will be raised
            pass
        except Exception as e:  # other exceptions will cause an error and result in failed testing
            raise e

    # Don't test --lint-code because Black will reformat the code and cause error when generating the coverage report
    # @pytest.mark.xdist_group(name="cli-dev")
    # def test_2_lint_code(self):
    #     arguments = copy(self.default_arguments)
    #     arguments["lint_code"] = True
    #     args = Namespace(**arguments)
    #     dev_command_factory(args).run()

    @pytest.mark.xdist_group(name="cli-dev")
    def test_3_cleanup(self):
        arguments = copy(self.default_arguments)
        arguments["cleanup"] = True
        args = Namespace(**arguments)
        dev_command_factory(args).run()


class TestPyPOTSCLIDoc(unittest.TestCase):
    # set up the default arguments
    default_arguments = {
        "gene_rst": False,
        "branch": "main",
        "gene_html": False,
        "view_doc": False,
        "port": 9075,
        "cleanup": False,
    }
    # `pypots-cli doc` must run under the project root dir
    os.chdir(PROJECT_ROOT_DIR)

    @pytest.mark.xdist_group(name="cli-doc")
    def test_0_gene_rst(self):
        arguments = copy(self.default_arguments)
        arguments["gene_rst"] = True
        args = Namespace(**arguments)
        doc_command_factory(args).run()

        logger.info("run again under a non-root dir")
        try:
            os.chdir(os.path.abspath(os.path.join(PROJECT_ROOT_DIR, "pypots")))
            doc_command_factory(args).run()
        except RuntimeError:  # try to run under a non-root dir, so RuntimeError will be raised
            pass
        except Exception as e:  # other exceptions will cause an error and result in failed testing
            raise e
        finally:
            os.chdir(PROJECT_ROOT_DIR)

    @pytest.mark.xdist_group(name="cli-doc")
    def test_1_gene_html(self):
        arguments = copy(self.default_arguments)
        arguments["gene_html"] = True
        args = Namespace(**arguments)
        try:
            doc_command_factory(args).run()
        except Exception as e:  # somehow we have some error when testing on Windows, so just print and pass below
            logger.error(e)

    @pytest.mark.xdist_group(name="cli-doc")
    @time_out(2, callback_func)  # wait for two seconds
    def test_2_view_doc(self):
        arguments = copy(self.default_arguments)
        arguments["view_doc"] = True
        args = Namespace(**arguments)
        try:
            doc_command_factory(args).run()
        except Exception as e:  # somehow we have some error when testing on Windows, so just print and pass below
            logger.error(e)

    @pytest.mark.xdist_group(name="cli-doc")
    def test_3_cleanup(self):
        arguments = copy(self.default_arguments)
        arguments["cleanup"] = True
        args = Namespace(**arguments)
        doc_command_factory(args).run()


class TestPyPOTSCLIEnv(unittest.TestCase):
    # set up the default arguments
    default_arguments = {
        "install": "optional",
        "tool": "conda",
    }

    # `pypots-cli env` must run under the project root dir
    os.chdir(PROJECT_ROOT_DIR)

    @pytest.mark.xdist_group(name="cli-env")
    def test_0_install_with_conda(self):
        arguments = copy(self.default_arguments)
        arguments["tool"] = "conda"
        args = Namespace(**arguments)
        try:
            env_command_factory(args).run()
        except Exception as e:  # somehow we have some error when testing on Windows, so just print and pass below
            logger.error(e)

    @pytest.mark.xdist_group(name="cli-env")
    def test_1_install_with_pip(self):
        arguments = copy(self.default_arguments)
        arguments["tool"] = "pip"
        args = Namespace(**arguments)
        try:
            env_command_factory(args).run()
        except Exception as e:  # somehow we have some error when testing on Windows, so just print and pass below
            logger.error(e)


if __name__ == "__main__":
    unittest.main()

1	"""	1✔
2	Test cases for the functions and classes in package `pypots.cli`.
3	"""
4
5	# Created by Wenjie Du <wenjay.du@gmail.com>
6	# License: GLP-v3
7
8	import os	1✔
9	import threading	1✔
10	import unittest	1✔
11	from argparse import Namespace	1✔
12	from copy import copy	1✔
13
14	import pytest	1✔
15
16	from pypots.cli.dev import dev_command_factory	1✔
17	from pypots.cli.doc import doc_command_factory	1✔
18	from pypots.cli.env import env_command_factory	1✔
19	from pypots.utils.logging import logger	1✔
20
21	PROJECT_ROOT_DIR = os.path.abspath(os.path.join(os.path.abspath(__file__), "../../.."))	1✔
22
23
24	def callback_func():	1✔
25	raise TimeoutError("Time out.")	×
26
27
28	def time_out(interval, callback):	1✔
29	def decorator(func):	1✔
30	def wrapper(args, *kwargs):	1✔
31	t = threading.Thread(target=func, args=args, kwargs=kwargs)	1✔
32	t.setDaemon(True)	1✔
33	t.start()	1✔
34	t.join(interval) # wait for interval seconds	1✔
35	if t.is_alive():	1✔
36	return threading.Timer(0, callback).start() # invoke callback()	×
37	else:
38	return	1✔
39
40	return wrapper	1✔
41
42	return decorator	1✔
43
44
45	class TestPyPOTSCLIDev(unittest.TestCase):	1✔
46	# set up the default arguments
47	default_arguments = {	1✔
48	"build": False,
49	"cleanup": False,
50	"run_tests": False,
51	"k": None,
52	"show_coverage": False,
53	"lint_code": False,
54	}
55	# `pypots-cli dev` must run under the project root dir
56	os.chdir(PROJECT_ROOT_DIR)	1✔
57
58	@pytest.mark.xdist_group(name="cli-dev")	1✔
59	def test_0_build(self):
60	arguments = copy(self.default_arguments)	1✔
61	arguments["build"] = True	1✔
62	args = Namespace(**arguments)	1✔
63	dev_command_factory(args).run()	1✔
64
65	@pytest.mark.xdist_group(name="cli-dev")	1✔
66	def test_1_run_tests(self):
67	arguments = copy(self.default_arguments)	1✔
68	arguments["run_tests"] = True	1✔
69	arguments["k"] = "try_to_find_a_non_existing_test_case"	1✔
70	args = Namespace(**arguments)	1✔
71	try:	1✔
72	dev_command_factory(args).run()	1✔
73	except RuntimeError: # try to find a non-existing test case, so RuntimeError will be raised	1✔
74	pass	1✔
75	except Exception as e: # other exceptions will cause an error and result in failed testing	×
76	raise e	×
77
78	# Don't test --lint-code because Black will reformat the code and cause error when generating the coverage report
79	# @pytest.mark.xdist_group(name="cli-dev")
80	# def test_2_lint_code(self):
81	# arguments = copy(self.default_arguments)
82	# arguments["lint_code"] = True
83	# args = Namespace(**arguments)
84	# dev_command_factory(args).run()
85
86	@pytest.mark.xdist_group(name="cli-dev")	1✔
87	def test_3_cleanup(self):
88	arguments = copy(self.default_arguments)	1✔
89	arguments["cleanup"] = True	1✔
90	args = Namespace(**arguments)	1✔
91	dev_command_factory(args).run()	1✔
92
93
94	class TestPyPOTSCLIDoc(unittest.TestCase):	1✔
95	# set up the default arguments
96	default_arguments = {	1✔
97	"gene_rst": False,
98	"branch": "main",
99	"gene_html": False,
100	"view_doc": False,
101	"port": 9075,
102	"cleanup": False,
103	}
104	# `pypots-cli doc` must run under the project root dir
105	os.chdir(PROJECT_ROOT_DIR)	1✔
106
107	@pytest.mark.xdist_group(name="cli-doc")	1✔
108	def test_0_gene_rst(self):
109	arguments = copy(self.default_arguments)	1✔
110	arguments["gene_rst"] = True	1✔
111	args = Namespace(**arguments)	1✔
112	doc_command_factory(args).run()	1✔
113
114	logger.info("run again under a non-root dir")	1✔
115	try:	1✔
116	os.chdir(os.path.abspath(os.path.join(PROJECT_ROOT_DIR, "pypots")))	1✔
117	doc_command_factory(args).run()	1✔
118	except RuntimeError: # try to run under a non-root dir, so RuntimeError will be raised	1✔
119	pass	1✔
120	except Exception as e: # other exceptions will cause an error and result in failed testing	×
121	raise e	×
122	finally:
123	os.chdir(PROJECT_ROOT_DIR)	1✔
124
125	@pytest.mark.xdist_group(name="cli-doc")	1✔
126	def test_1_gene_html(self):
127	arguments = copy(self.default_arguments)	1✔
128	arguments["gene_html"] = True	1✔
129	args = Namespace(**arguments)	1✔
130	try:	1✔
131	doc_command_factory(args).run()	1✔
132	except Exception as e: # somehow we have some error when testing on Windows, so just print and pass below	×
133	logger.error(e)	×
134
135	@pytest.mark.xdist_group(name="cli-doc")	1✔
136	@time_out(2, callback_func) # wait for two seconds	1✔
137	def test_2_view_doc(self):
138	arguments = copy(self.default_arguments)	1✔
139	arguments["view_doc"] = True	1✔
140	args = Namespace(**arguments)	1✔
141	try:	1✔
142	doc_command_factory(args).run()	1✔
143	except Exception as e: # somehow we have some error when testing on Windows, so just print and pass below	1✔
144	logger.error(e)	1✔
145
146	@pytest.mark.xdist_group(name="cli-doc")	1✔
147	def test_3_cleanup(self):
148	arguments = copy(self.default_arguments)	1✔
149	arguments["cleanup"] = True	1✔
150	args = Namespace(**arguments)	1✔
151	doc_command_factory(args).run()	1✔
152
153
154	class TestPyPOTSCLIEnv(unittest.TestCase):	1✔
155	# set up the default arguments
156	default_arguments = {	1✔
157	"install": "optional",
158	"tool": "conda",
159	}
160
161	# `pypots-cli env` must run under the project root dir
162	os.chdir(PROJECT_ROOT_DIR)	1✔
163
164	@pytest.mark.xdist_group(name="cli-env")	1✔
165	def test_0_install_with_conda(self):
166	arguments = copy(self.default_arguments)	1✔
167	arguments["tool"] = "conda"	1✔
168	args = Namespace(**arguments)	1✔
169	try:	1✔
170	env_command_factory(args).run()	1✔
171	except Exception as e: # somehow we have some error when testing on Windows, so just print and pass below	1✔
172	logger.error(e)	1✔
173
174	@pytest.mark.xdist_group(name="cli-env")	1✔
175	def test_1_install_with_pip(self):
176	arguments = copy(self.default_arguments)	1✔
177	arguments["tool"] = "pip"	1✔
178	args = Namespace(**arguments)	1✔
179	try:	1✔
180	env_command_factory(args).run()	1✔
181	except Exception as e: # somehow we have some error when testing on Windows, so just print and pass below	1✔
182	logger.error(e)	1✔
183
184
185	if __name__ == "__main__":	1✔
186	unittest.main()	×

WenjieDu / PyPOTS / 4845620836

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