3836586642

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github

Committed by GitHub

Commit Message

Merge 2a19b5c72 into 8ab12c504

Pull Request Pull Request #1510: Fix issue with TANDEM DEM and minor RGI7 issue

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89.48

/oggm/graphics.py

"""Useful plotting functions"""
import os
import functools
import logging
from collections import OrderedDict
import itertools
import textwrap
import xarray as xr

import matplotlib.colors as colors
import matplotlib.pyplot as plt
import numpy as np
import shapely.geometry as shpg
from matplotlib import cm as colormap

try:
    import salem
except ImportError:
    pass

OGGM_CMAPS = dict()

from oggm.core.flowline import FileModel
from oggm import cfg, utils
from oggm.core import gis

# Module logger
log = logging.getLogger(__name__)


def set_oggm_cmaps():
    # Set global colormaps
    global OGGM_CMAPS
    OGGM_CMAPS['terrain'] = colormap.terrain
    OGGM_CMAPS['section_thickness'] = plt.cm.get_cmap('YlGnBu')
    OGGM_CMAPS['glacier_thickness'] = plt.get_cmap('viridis')
    OGGM_CMAPS['ice_velocity'] = plt.cm.get_cmap('Reds')


set_oggm_cmaps()


def truncate_colormap(cmap, minval=0.0, maxval=1.0, n=256):
    """Remove extreme colors from a colormap."""
    new_cmap = colors.LinearSegmentedColormap.from_list(
        'trunc({n},{a:.2f},{b:.2f})'.format(n=cmap.name, a=minval, b=maxval),
        cmap(np.linspace(minval, maxval, n)))
    return new_cmap


def gencolor_generator(n, cmap='Set1'):
    """ Color generator intended to work with qualitative color scales."""
    # don't use more than 9 discrete colors
    n_colors = min(n, 9)
    cmap = colormap.get_cmap(cmap, n_colors)
    colors = cmap(range(n_colors))
    for i in range(n):
        yield colors[i % n_colors]


def gencolor(n, cmap='Set1'):

    if isinstance(cmap, str):
        return gencolor_generator(n, cmap=cmap)
    else:
        return itertools.cycle(cmap)


def surf_to_nan(surf_h, thick):

    t1 = thick[:-2]
    t2 = thick[1:-1]
    t3 = thick[2:]
    pnan = ((t1 == 0) & (t2 == 0)) & ((t2 == 0) & (t3 == 0))
    surf_h[np.where(pnan)[0] + 1] = np.NaN
    return surf_h


def combine_grids(gdirs):
    """ Combines individual grids of different glacier directories to show
        multiple glaciers in the same plot. The resulting grid extent includes
        all individual grids completely.

    Parameters
    ----------
    gdirs : [], required
        A list of GlacierDirectories.

    Returns
    -------
    salem.gis.Grid
    """

    new_grid = {
        'proj': None,
        'nxny': None,
        'dxdy': None,
        'x0y0': None,
        'pixel_ref': None
    }

    left_use = None
    right_use = None
    bottom_use = None
    top_use = None
    dx_use = None
    dy_use = None

    for gdir in gdirs:
        # use the first gdir to define some values
        if new_grid['proj'] is None:
            new_grid['proj'] = gdir.grid.proj
        if new_grid['pixel_ref'] is None:
            new_grid['pixel_ref'] = gdir.grid.pixel_ref

        # find largest extend including all grids completely
        (left, right, bottom, top) = gdir.grid.extent_in_crs(new_grid['proj'])
        if (left_use is None) or (left_use > left):
            left_use = left
        if right_use is None or right_use < right:
            right_use = right
        if bottom_use is None or bottom_use > bottom:
            bottom_use = bottom
        if top_use is None or top_use < top:
            top_use = top

        # find smallest dx and dy for the estimation of nx and ny
        dx = gdir.grid.dx
        dy = gdir.grid.dy
        if dx_use is None or dx_use > dx:
            dx_use = dx
        # dy could be negative
        if dy_use is None or abs(dy_use) > abs(dy):
            dy_use = dy

    # calculate nx and ny, the final extend could be one grid point larger or
    # smaller due to round()
    nx_use = round((right_use - left_use) / dx_use)
    ny_use = round((top_use - bottom_use) / abs(dy_use))

    # finally define the last values of the new grid
    if np.sign(dy_use) < 0:
        new_grid['x0y0'] = (left_use, top_use)
    else:
        new_grid['x0y0'] = (left_use, bottom_use)
    new_grid['nxny'] = (nx_use, ny_use)
    new_grid['dxdy'] = (dx_use, dy_use)

    return salem.gis.Grid.from_dict(new_grid)


def _plot_map(plotfunc):
    """
    Decorator for common salem.Map plotting logic
    """
    commondoc = """

    Parameters
    ----------
    gdirs : [] or GlacierDirectory, required
        A single GlacierDirectory or a list of gdirs to plot.
    ax : matplotlib axes object, optional
        If None, uses own axis
    smap : Salem Map object, optional
        If None, makes a map from the first gdir in the list
    add_scalebar : Boolean, optional, default=True
        Adds scale bar to the plot
    add_colorbar : Boolean, optional, default=True
        Adds colorbar to axis
    horizontal_colorbar : Boolean, optional, default=False
        Horizontal colorbar instead
    title : str, optional
        If left to None, the plot decides whether it writes a title or not. Set
        to '' for no title.
    title_comment : str, optional
        add something to the default title. Set to none to remove default
    lonlat_contours_kwargs: dict, optional
        pass kwargs to salem.Map.set_lonlat_contours
    cbar_ax: ax, optional
        ax where to plot the colorbar
    autosave : bool, optional
        set to True to override to a default savefig filename (useful
        for multiprocessing)
    figsize : tuple, optional
        size of the figure
    savefig : str, optional
        save the figure to a file instead of displaying it
    savefig_kwargs : dict, optional
        the kwargs to plt.savefig
    extend_plot_limit : bool, optional
        set to True to extend the plotting limits for all provided gdirs grids
    """

    # Build on the original docstring
    plotfunc.__doc__ = '\n'.join((plotfunc.__doc__, commondoc))

    @functools.wraps(plotfunc)
    def newplotfunc(gdirs, ax=None, smap=None, add_colorbar=True, title=None,
                    title_comment=None, horizontal_colorbar=False,
                    lonlat_contours_kwargs=None, cbar_ax=None, autosave=False,
                    add_scalebar=True, figsize=None, savefig=None,
                    savefig_kwargs=None, extend_plot_limit=False,
                    **kwargs):

        dofig = False
        if ax is None:
            fig = plt.figure(figsize=figsize)
            ax = fig.add_subplot(111)
            dofig = True

        # Cast to list
        gdirs = utils.tolist(gdirs)

        if smap is None:
            if extend_plot_limit:
                grid_combined = combine_grids(gdirs)
                mp = salem.Map(grid_combined, countries=False,
                               nx=grid_combined.nx)
            else:
                mp = salem.Map(gdirs[0].grid, countries=False,
                               nx=gdirs[0].grid.nx)
        else:
            mp = smap

        if lonlat_contours_kwargs is not None:
            mp.set_lonlat_contours(**lonlat_contours_kwargs)

        if add_scalebar:
            mp.set_scale_bar()
        out = plotfunc(gdirs, ax=ax, smap=mp, **kwargs)

        if add_colorbar and 'cbar_label' in out:
            cbprim = out.get('cbar_primitive', mp)
            if cbar_ax:
                cb = cbprim.colorbarbase(cbar_ax)
            else:
                if horizontal_colorbar:
                    cb = cbprim.append_colorbar(ax, "bottom", size="5%",
                                                pad=0.4)
                else:
                    cb = cbprim.append_colorbar(ax, "right", size="5%",
                                                pad=0.2)
            cb.set_label(out['cbar_label'])

        if title is None:
            if 'title' not in out:
                # Make a default one
                title = ''
                if len(gdirs) == 1:
                    gdir = gdirs[0]
                    title = gdir.rgi_id
                    if gdir.name is not None and gdir.name != '':
                        title += ': ' + gdir.name
                out['title'] = title

            if title_comment is None:
                title_comment = out.get('title_comment', '')

            out['title'] += title_comment
            ax.set_title(out['title'])
        else:
            ax.set_title(title)

        if dofig:
            plt.tight_layout()

        if autosave:
            savefig = os.path.join(cfg.PATHS['working_dir'], 'plots')
            utils.mkdir(savefig)
            savefig = os.path.join(savefig, plotfunc.__name__ + '_' +
                                   gdirs[0].rgi_id + '.png')

        if savefig is not None:
            plt.savefig(savefig, **savefig_kwargs)
            plt.close()

    return newplotfunc


def plot_googlemap(gdirs, ax=None, figsize=None):
    """Plots the glacier(s) over a googlemap."""

    dofig = False
    if ax is None:
        fig = plt.figure(figsize=figsize)
        ax = fig.add_subplot(111)
        dofig = True

    gdirs = utils.tolist(gdirs)

    xx, yy = [], []
    for gdir in gdirs:
        xx.extend(gdir.extent_ll[0])
        yy.extend(gdir.extent_ll[1])

    gm = salem.GoogleVisibleMap(xx, yy,
                                key='AIzaSyDWG_aTgfU7CeErtIzWfdGxpStTlvDXV_o')

    img = gm.get_vardata()
    cmap = salem.Map(gm.grid, countries=False, nx=gm.grid.nx)
    cmap.set_rgb(img)

    for gdir in gdirs:
        cmap.set_shapefile(gdir.read_shapefile('outlines'))

    cmap.plot(ax)
    title = ''
    if len(gdirs) == 1:
        title = gdir.rgi_id
        if gdir.name is not None and gdir.name != '':
            title += ': ' + gdir.name
    ax.set_title(title)

    if dofig:
        plt.tight_layout()


@_plot_map
def plot_raster(gdirs, var_name=None, cmap='viridis', ax=None, smap=None):
    """Plot any raster from the gridded_data file."""

    # Files
    gdir = gdirs[0]

    with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
        var = nc.variables[var_name]
        data = var[:]
        description = var.long_name
        description += ' [{}]'.format(var.units)

    smap.set_data(data)

    smap.set_cmap(cmap)

    for gdir in gdirs:
        crs = gdir.grid.center_grid

        try:
            geom = gdir.read_pickle('geometries')
            # Plot boundaries
            poly_pix = geom['polygon_pix']
            smap.set_geometry(poly_pix, crs=crs, fc='none',
                              alpha=0.3, zorder=2, linewidth=.2)
            poly_pix = utils.tolist(poly_pix)
            for _poly in poly_pix:
                for l in _poly.interiors:
                    smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)
        except FileNotFoundError:
            smap.set_shapefile(gdir.read_shapefile('outlines'))

    smap.plot(ax)

    return dict(cbar_label='\n'.join(textwrap.wrap(description, 30)))


@_plot_map
def plot_domain(gdirs, ax=None, smap=None, use_netcdf=False):
    """Plot the glacier directory.

    Parameters
    ----------
    gdirs
    ax
    smap
    use_netcdf : bool
        use output of glacier_masks instead of geotiff DEM
    """

    # Files
    gdir = gdirs[0]
    if use_netcdf:
        with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
            topo = nc.variables['topo'][:]
    else:
        topo = gis.read_geotiff_dem(gdir)
    try:
        smap.set_data(topo)
    except ValueError:
        pass

    cm = truncate_colormap(OGGM_CMAPS['terrain'], minval=0.25, maxval=1.0)
    smap.set_plot_params(cmap=cm)

    for gdir in gdirs:
        crs = gdir.grid.center_grid

        try:
            geom = gdir.read_pickle('geometries')

            # Plot boundaries
            poly_pix = geom['polygon_pix']
            smap.set_geometry(poly_pix, crs=crs, fc='white',
                              alpha=0.3, zorder=2, linewidth=.2)
            poly_pix = utils.tolist(poly_pix)
            for _poly in poly_pix:
                for l in _poly.interiors:
                    smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)
        except FileNotFoundError:
            smap.set_shapefile(gdir.read_shapefile('outlines'))

    smap.plot(ax)

    return dict(cbar_label='Alt. [m]')


@_plot_map
def plot_centerlines(gdirs, ax=None, smap=None, use_flowlines=False,
                     add_downstream=False, lines_cmap='Set1',
                     add_line_index=False, use_model_flowlines=False):
    """Plots the centerlines of a glacier directory."""

    if add_downstream and not use_flowlines:
        raise ValueError('Downstream lines can be plotted with flowlines only')

    # Files
    filename = 'centerlines'
    if use_model_flowlines:
        filename = 'model_flowlines'
    elif use_flowlines:
        filename = 'inversion_flowlines'

    gdir = gdirs[0]
    with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
        topo = nc.variables['topo'][:]

    cm = truncate_colormap(OGGM_CMAPS['terrain'], minval=0.25, maxval=1.0)
    smap.set_plot_params(cmap=cm)
    smap.set_data(topo)
    for gdir in gdirs:
        crs = gdir.grid.center_grid
        geom = gdir.read_pickle('geometries')

        # Plot boundaries
        poly_pix = geom['polygon_pix']

        smap.set_geometry(poly_pix, crs=crs, fc='white',
                          alpha=0.3, zorder=2, linewidth=.2)
        poly_pix = utils.tolist(poly_pix)
        for _poly in poly_pix:
            for l in _poly.interiors:
                smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)

        # plot Centerlines
        cls = gdir.read_pickle(filename)

        # Go in reverse order for red always being the longest
        cls = cls[::-1]
        nl = len(cls)
        color = gencolor(len(cls) + 1, cmap=lines_cmap)
        for i, (l, c) in enumerate(zip(cls, color)):
            if add_downstream and not gdir.is_tidewater and l is cls[0]:
                line = gdir.read_pickle('downstream_line')['full_line']
            else:
                line = l.line

            smap.set_geometry(line, crs=crs, color=c,
                              linewidth=2.5, zorder=50)

            text = '{}'.format(nl - i - 1) if add_line_index else None
            smap.set_geometry(l.head, crs=gdir.grid, marker='o',
                              markersize=60, alpha=0.8, color=c, zorder=99,
                              text=text)

            for j in l.inflow_points:
                smap.set_geometry(j, crs=crs, marker='o',
                                  markersize=40, edgecolor='k', alpha=0.8,
                                  zorder=99, facecolor='none')

    smap.plot(ax)
    return dict(cbar_label='Alt. [m]')


@_plot_map
def plot_catchment_areas(gdirs, ax=None, smap=None, lines_cmap='Set1',
                         mask_cmap='Set2'):
    """Plots the catchments out of a glacier directory.
    """

    gdir = gdirs[0]
    if len(gdirs) > 1:
        raise NotImplementedError('Cannot plot a list of gdirs (yet)')

    with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
        topo = nc.variables['topo'][:]
        mask = nc.variables['glacier_mask'][:] * np.NaN

    smap.set_topography(topo)

    crs = gdir.grid.center_grid
    geom = gdir.read_pickle('geometries')

    # Plot boundaries
    poly_pix = geom['polygon_pix']
    smap.set_geometry(poly_pix, crs=crs, fc='none', zorder=2,
                      linewidth=.2)
    for l in poly_pix.interiors:
        smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)

    # plot Centerlines
    cls = gdir.read_pickle('centerlines')[::-1]
    color = gencolor(len(cls) + 1, cmap=lines_cmap)
    for l, c in zip(cls, color):
        smap.set_geometry(l.line, crs=crs, color=c,
                          linewidth=2.5, zorder=50)

    # catchment areas
    cis = gdir.read_pickle('geometries')['catchment_indices']
    for j, ci in enumerate(cis[::-1]):
        mask[tuple(ci.T)] = j+1

    smap.set_cmap(mask_cmap)
    smap.set_data(mask)
    smap.plot(ax)

    return {}


@_plot_map
def plot_catchment_width(gdirs, ax=None, smap=None, corrected=False,
                         add_intersects=False, add_touches=False,
                         lines_cmap='Set1'):
    """Plots the catchment widths out of a glacier directory.
    """

    gdir = gdirs[0]
    with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
        topo = nc.variables['topo'][:]
    # Dirty optim
    try:
        smap.set_topography(topo)
    except ValueError:
        pass

    # Maybe plot touches
    xis, yis, cis = [], [], []
    ogrid = smap.grid

    for gdir in gdirs:
        crs = gdir.grid.center_grid
        geom = gdir.read_pickle('geometries')

        # Plot boundaries
        poly_pix = geom['polygon_pix']
        smap.set_geometry(poly_pix, crs=crs, fc='none', zorder=2,
                          linewidth=.2)
        for l in poly_pix.interiors:
            smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)

        # Plot intersects
        if add_intersects and gdir.has_file('intersects'):
            gdf = gdir.read_shapefile('intersects')
            smap.set_shapefile(gdf, color='k', linewidth=3.5, zorder=3)

        # plot Centerlines
        cls = gdir.read_pickle('inversion_flowlines')[::-1]
        color = gencolor(len(cls) + 1, cmap=lines_cmap)
        for l, c in zip(cls, color):
            smap.set_geometry(l.line, crs=crs, color=c,
                              linewidth=2.5, zorder=50)
            if corrected:
                for wi, cur, (n1, n2) in zip(l.widths, l.line.coords,
                                             l.normals):
                    _l = shpg.LineString([shpg.Point(cur + wi / 2. * n1),
                                          shpg.Point(cur + wi / 2. * n2)])

                    smap.set_geometry(_l, crs=crs, color=c,
                                      linewidth=0.6, zorder=50)
            else:
                for wl, wi in zip(l.geometrical_widths, l.widths):
                    col = c if np.isfinite(wi) else 'grey'
                    for w in wl.geoms:
                        smap.set_geometry(w, crs=crs, color=col,
                                          linewidth=0.6, zorder=50)

            if add_touches:
                pok = np.where(l.is_rectangular)
                xi, yi = l.line.xy
                xi, yi = ogrid.transform(np.asarray(xi)[pok],
                                         np.asarray(yi)[pok], crs=crs)
                xis.append(xi)
                yis.append(yi)
                cis.append(c)

    smap.plot(ax)
    for xi, yi, c in zip(xis, yis, cis):
        ax.scatter(xi, yi, color=c, s=20, zorder=51)

    return {}


@_plot_map
def plot_inversion(gdirs, ax=None, smap=None, linewidth=3, vmax=None,
                   plot_var='thick', cbar_label='Section thickness (m)',
                   color_map='YlGnBu'):
    """Plots the result of the inversion out of a glacier directory.
       Default is thickness (m). Change plot_var to u_surface or u_integrated
       for velocity (m/yr)."""

    gdir = gdirs[0]
    with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
        topo = nc.variables['topo'][:]

    # Dirty optim
    try:
        smap.set_topography(topo)
    except ValueError:
        pass

    toplot_var = np.array([])
    toplot_lines = []
    toplot_crs = []
    vol = []
    for gdir in gdirs:
        crs = gdir.grid.center_grid
        geom = gdir.read_pickle('geometries')
        inv = gdir.read_pickle('inversion_output')
        # Plot boundaries
        poly_pix = geom['polygon_pix']
        smap.set_geometry(poly_pix, crs=crs, fc='none', zorder=2,
                          linewidth=.2)
        for l in poly_pix.interiors:
            smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)

        # Plot Centerlines
        cls = gdir.read_pickle('inversion_flowlines')
        for l, c in zip(cls, inv):

            smap.set_geometry(l.line, crs=crs, color='gray',
                              linewidth=1.2, zorder=50)

            toplot_var = np.append(toplot_var, c[plot_var])
            for wi, cur, (n1, n2) in zip(l.widths, l.line.coords, l.normals):
                line = shpg.LineString([shpg.Point(cur + wi / 2. * n1),
                                        shpg.Point(cur + wi / 2. * n2)])
                toplot_lines.append(line)
                toplot_crs.append(crs)
            vol.extend(c['volume'])

    dl = salem.DataLevels(cmap=plt.get_cmap(color_map),
                          data=toplot_var, vmin=0, vmax=vmax)
    colors = dl.to_rgb()
    for l, c, crs in zip(toplot_lines, colors, toplot_crs):
        smap.set_geometry(l, crs=crs, color=c,
                          linewidth=linewidth, zorder=50)

    smap.plot(ax)
    out = dict(cbar_label=cbar_label,
                cbar_primitive=dl)

    if plot_var == 'thick':
        out['title_comment'] = ' ({:.2f} km3)'.format(np.nansum(vol) * 1e-9)

    return out


@_plot_map
def plot_distributed_thickness(gdirs, ax=None, smap=None, varname_suffix=''):
    """Plots the result of the inversion out of a glacier directory.

    Method: 'alt' or 'interp'
    """

    gdir = gdirs[0]

    with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
        topo = nc.variables['topo'][:]

    smap.set_topography(topo)

    for gdir in gdirs:
        grids_file = gdir.get_filepath('gridded_data')
        with utils.ncDataset(grids_file) as nc:
            import warnings
            with warnings.catch_warnings():
                # https://github.com/Unidata/netcdf4-python/issues/766
                warnings.filterwarnings("ignore", category=RuntimeWarning)
                vn = 'distributed_thickness' + varname_suffix
                thick = nc.variables[vn][:]
                mask = nc.variables['glacier_mask'][:]

        thick = np.where(mask, thick, np.NaN)

        crs = gdir.grid.center_grid

        # Plot boundaries
        # Try to read geometries.pkl as the glacier boundary,
        # if it can't be found, we use the shapefile to instead.
        try:
            geom = gdir.read_pickle('geometries')
            poly_pix = geom['polygon_pix']
            smap.set_geometry(poly_pix, crs=crs, fc='none', zorder=2, linewidth=.2)
            for l in poly_pix.interiors:
                smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)
        except FileNotFoundError:
            smap.set_shapefile(gdir.read_shapefile('outlines'), fc='none')
        smap.set_data(thick, crs=crs, overplot=True)

    smap.set_plot_params(cmap=OGGM_CMAPS['glacier_thickness'])
    smap.plot(ax)

    return dict(cbar_label='Glacier thickness [m]')


@_plot_map
def plot_modeloutput_map(gdirs, ax=None, smap=None, model=None,
                         vmax=None, linewidth=3, filesuffix='',
                         modelyr=None, plotting_var='thickness'):
    """Plots the result of the model output.

    Parameters
    ----------
    gdirs
    ax
    smap
    model
    vmax
    linewidth
    filesuffix
    modelyr
    plotting_var : str
        Defines which variable should be plotted. Options are 'thickness'
        (default) and 'velocity'. If you want to plot velocity the flowline
        diagnostics of the run are needed (set
        cfg.PARAMS['store_fl_diagnostics'] = True, before the
        actual simulation) and be aware that there is no velocity available for
        the first year of the simulation.

    Returns
    -------

    """

    gdir = gdirs[0]
    with utils.ncDataset(gdir.get_filepath('gridded_data')) as nc:
        topo = nc.variables['topo'][:]

    # Dirty optim
    try:
        smap.set_topography(topo)
    except ValueError:
        pass

    toplot_var = np.array([])
    toplot_lines = []
    toplot_crs = []

    if model is None:
        models = []
        for gdir in gdirs:
            model = FileModel(gdir.get_filepath('model_geometry',
                                                filesuffix=filesuffix))
            model.run_until(modelyr)
            models.append(model)
    else:
        models = utils.tolist(model)

    if modelyr is None:
        modelyr = models[0].yr

    for gdir, model in zip(gdirs, models):
        geom = gdir.read_pickle('geometries')
        poly_pix = geom['polygon_pix']

        crs = gdir.grid.center_grid
        smap.set_geometry(poly_pix, crs=crs, fc='none', zorder=2, linewidth=.2)

        poly_pix = utils.tolist(poly_pix)
        for _poly in poly_pix:
            for l in _poly.interiors:
                smap.set_geometry(l, crs=crs, color='black', linewidth=0.5)

        if plotting_var == 'velocity':
            f_fl_diag = gdir.get_filepath('fl_diagnostics',
                                          filesuffix=filesuffix)

        # plot Centerlines
        cls = model.fls
        for fl_id, l in enumerate(cls):
            smap.set_geometry(l.line, crs=crs, color='gray',
                              linewidth=1.2, zorder=50)
            if plotting_var == 'thickness':
                toplot_var = np.append(toplot_var, l.thick)
            elif plotting_var == 'velocity':
                with xr.open_dataset(f_fl_diag, group=f'fl_{fl_id}') as ds:
                    toplot_var = np.append(toplot_var,
                                           ds.sel(dict(time=modelyr)).ice_velocity_myr)
            widths = l.widths.copy()
            widths = np.where(l.thick > 0, widths, 0.)
            for wi, cur, (n1, n2) in zip(widths, l.line.coords, l.normals):
                line = shpg.LineString([shpg.Point(cur + wi/2. * n1),
                                        shpg.Point(cur + wi/2. * n2)])
                toplot_lines.append(line)
                toplot_crs.append(crs)

    if plotting_var == 'thickness':
        cmap = OGGM_CMAPS['section_thickness']
        cbar_label = 'Section thickness [m]'
    elif plotting_var == 'velocity':
        cmap = OGGM_CMAPS['ice_velocity']
        cbar_label = 'Ice velocity [m yr-1]'
    dl = salem.DataLevels(cmap=cmap,
                          data=toplot_var, vmin=0, vmax=vmax)
    colors = dl.to_rgb()
    for l, c, crs in zip(toplot_lines, colors, toplot_crs):
        smap.set_geometry(l, crs=crs, color=c,
                          linewidth=linewidth, zorder=50)
    smap.plot(ax)
    return dict(cbar_label=cbar_label,
                cbar_primitive=dl,
                title_comment=' -- year: {:d}'.format(np.int64(model.yr)))


def plot_modeloutput_section(model=None, ax=None, title=''):
    """Plots the result of the model output along the flowline.

    Parameters
    ----------
    model: obj
        either a FlowlineModel or a list of model flowlines.
    fig
    title
    """

    try:
        fls = model.fls
    except AttributeError:
        fls = model

    if ax is None:
        fig = plt.figure(figsize=(12, 6))
        ax = fig.add_axes([0.07, 0.08, 0.7, 0.84])
    else:
        fig = plt.gcf()

    # Compute area histo
    area = np.array([])
    height = np.array([])
    bed = np.array([])
    for cls in fls:
        a = cls.widths_m * cls.dx_meter * 1e-6
        a = np.where(cls.thick > 0, a, 0)
        area = np.concatenate((area, a))
        height = np.concatenate((height, cls.surface_h))
        bed = np.concatenate((bed, cls.bed_h))
    ylim = [bed.min(), height.max()]

    # Plot histo
    posax = ax.get_position()
    posax = [posax.x0 + 2 * posax.width / 3.0,
             posax.y0,  posax.width / 3.0,
             posax.height]
    axh = fig.add_axes(posax, frameon=False)

    axh.hist(height, orientation='horizontal', range=ylim, bins=20,
             alpha=0.3, weights=area)
    axh.invert_xaxis()
    axh.xaxis.tick_top()
    axh.set_xlabel('Area incl. tributaries (km$^2$)')
    axh.xaxis.set_label_position('top')
    axh.set_ylim(ylim)
    axh.yaxis.set_ticks_position('right')
    axh.set_yticks([])
    axh.axhline(y=ylim[1], color='black', alpha=1)  # qick n dirty trick

    # plot Centerlines
    cls = fls[-1]
    x = np.arange(cls.nx) * cls.dx * cls.map_dx

    # Plot the bed
    ax.plot(x, cls.bed_h, color='k', linewidth=2.5, label='Bed (Parab.)')

    # Where trapezoid change color
    if hasattr(cls, '_do_trapeze') and cls._do_trapeze:
        bed_t = cls.bed_h * np.NaN
        pt = cls.is_trapezoid & (~cls.is_rectangular)
        bed_t[pt] = cls.bed_h[pt]
        ax.plot(x, bed_t, color='rebeccapurple', linewidth=2.5,
                label='Bed (Trap.)')
        bed_t = cls.bed_h * np.NaN
        bed_t[cls.is_rectangular] = cls.bed_h[cls.is_rectangular]
        ax.plot(x, bed_t, color='crimson', linewidth=2.5, label='Bed (Rect.)')

    # Plot glacier
    surfh = surf_to_nan(cls.surface_h, cls.thick)
    ax.plot(x, surfh, color='#003399', linewidth=2, label='Glacier')

    # Plot tributaries
    for i, l in zip(cls.inflow_indices, cls.inflows):
        if l.thick[-1] > 0:
            ax.plot(x[i], cls.surface_h[i], 's', markerfacecolor='#993399',
                    markeredgecolor='k',
                    label='Tributary (active)')
        else:
            ax.plot(x[i], cls.surface_h[i], 's', markerfacecolor='w',
                    markeredgecolor='k',
                    label='Tributary (inactive)')
    if getattr(model, 'do_calving', False):
        ax.hlines(model.water_level, x[0], x[-1], linestyles=':', color='C0')

    ax.set_ylim(ylim)

    ax.spines['top'].set_color('none')
    ax.xaxis.set_ticks_position('bottom')
    ax.set_xlabel('Distance along flowline (m)')
    ax.set_ylabel('Altitude (m)')

    # Title
    ax.set_title(title, loc='left')

    # Legend
    handles, labels = ax.get_legend_handles_labels()
    by_label = OrderedDict(zip(labels, handles))
    ax.legend(list(by_label.values()), list(by_label.keys()),
              bbox_to_anchor=(1.34, 1.0),
              frameon=False)


def plot_modeloutput_section_withtrib(model=None, fig=None, title=''):
    """Plots the result of the model output along the flowline.

    Parameters
    ----------
    model: obj
        either a FlowlineModel or a list of model flowlines.
    fig
    title
    """

    try:
        fls = model.fls
    except AttributeError:
        fls = model

    n_tribs = len(fls) - 1

    axs = []
    if n_tribs == 0:
        if fig is None:
            fig = plt.figure(figsize=(8, 5))
        axmaj = fig.add_subplot(111)
    elif n_tribs <= 3:
        if fig is None:
            fig = plt.figure(figsize=(14, 10))
        axmaj = plt.subplot2grid((2, 3), (1, 0), colspan=3)
        for i in np.arange(n_tribs):
            axs.append(plt.subplot2grid((2, 3), (0, i)))
    elif n_tribs <= 6:
        if fig is None:
            fig = plt.figure(figsize=(14, 10))
        axmaj = plt.subplot2grid((3, 3), (2, 0), colspan=3)
        for i in np.arange(n_tribs):
            j = 0
            if i >= 3:
                i -= 3
                j = 1
            axs.append(plt.subplot2grid((3, 3), (j, i)))
    else:
        raise NotImplementedError()

    for i, cls in enumerate(fls):
        if i == n_tribs:
            ax = axmaj
        else:
            ax = axs[i]

        x = np.arange(cls.nx) * cls.dx * cls.map_dx

        # Plot the bed
        ax.plot(x, cls.bed_h, color='k', linewidth=2.5, label='Bed (Parab.)')

        # Where trapezoid change color
        if hasattr(cls, '_do_trapeze') and cls._do_trapeze:
            bed_t = cls.bed_h * np.NaN
            pt = cls.is_trapezoid & (~cls.is_rectangular)
            bed_t[pt] = cls.bed_h[pt]
            ax.plot(x, bed_t, color='rebeccapurple', linewidth=2.5,
                    label='Bed (Trap.)')
            bed_t = cls.bed_h * np.NaN
            bed_t[cls.is_rectangular] = cls.bed_h[cls.is_rectangular]
            ax.plot(x, bed_t, color='crimson', linewidth=2.5,
                    label='Bed (Rect.)')

        # Plot glacier
        surfh = surf_to_nan(cls.surface_h, cls.thick)
        ax.plot(x, surfh, color='#003399', linewidth=2, label='Glacier')

        # Plot tributaries
        for i, l in zip(cls.inflow_indices, cls.inflows):
            if l.thick[-1] > 0:
                ax.plot(x[i], cls.surface_h[i], 's', color='#993399',
                        label='Tributary (active)')
            else:
                ax.plot(x[i], cls.surface_h[i], 's', color='none',
                        label='Tributary (inactive)')

        ax.spines['top'].set_color('none')
        ax.xaxis.set_ticks_position('bottom')
        ax.set_xlabel('Distance along flowline (m)')
        ax.set_ylabel('Altitude (m)')

    # Title
    plt.title(title, loc='left')

    # Legend
    handles, labels = ax.get_legend_handles_labels()
    by_label = OrderedDict(zip(labels, handles))
    ax.legend(list(by_label.values()), list(by_label.keys()),
              loc='best', frameon=False)
    fig.tight_layout()

OGGM / oggm / 3836586642

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