#12466

pending completion

Build # #12466

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

<a href="https://github.com/datajoint/datajoint-python/commit/<a class=hub.com/datajoint/datajoint-python/commit/37e37dd782736f3f9663e132991780c7b506ee7a">37e37dd78<a href="https://github.com/datajoint/datajoint-python/commit/37e37dd782736f3f9663e132991780c7b506ee7a">">Merge </a><a class="double-link" href="https://github.com/datajoint/datajoint-python/commit/<a class="double-link" href="https://github.com/datajoint/datajoint-python/commit/f341d54a9b991d470d8b3efc76a93faf0b2f00b2">f341d54a9</a>">f341d54a9</a><a href="https://github.com/datajoint/datajoint-python/commit/37e37dd782736f3f9663e132991780c7b506ee7a"> into 0ff34f283">0ff34f283</a>

Run Details

60 of 60 new or added lines in 15 files covered. (100.0%)

3078 of 3409 relevant lines covered (90.29%)

0.9 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

83.33

/datajoint/diagram.py

import networkx as nx
import re
import functools
import io
import logging
import inspect
from .table import Table
from .dependencies import unite_master_parts
from .user_tables import Manual, Imported, Computed, Lookup, Part
from .errors import DataJointError
from .table import lookup_class_name


try:
    from matplotlib import pyplot as plt

    plot_active = True
except:
    plot_active = False

try:
    from networkx.drawing.nx_pydot import pydot_layout

    diagram_active = True
except:
    diagram_active = False


logger = logging.getLogger(__name__.split(".")[0])
user_table_classes = (Manual, Lookup, Computed, Imported, Part)


class _AliasNode:
    """
    special class to indicate aliased foreign keys
    """

    pass


def _get_tier(table_name):
    if not table_name.startswith("`"):
        return _AliasNode
    else:
        try:
            return next(
                tier
                for tier in user_table_classes
                if re.fullmatch(tier.tier_regexp, table_name.split("`")[-2])
            )
        except StopIteration:
            return None


if not diagram_active:

    class Diagram:
        """
        Entity relationship diagram, currently disabled due to the lack of required packages: matplotlib and pygraphviz.

        To enable Diagram feature, please install both matplotlib and pygraphviz. For instructions on how to install
        these two packages, refer to http://docs.datajoint.io/setup/Install-and-connect.html#python and
        http://tutorials.datajoint.io/setting-up/datajoint-python.html
        """

        def __init__(self, *args, **kwargs):
            logger.warning(
                "Please install matplotlib and pygraphviz libraries to enable the Diagram feature."
            )

else:

    class Diagram(nx.DiGraph):
        """
        Entity relationship diagram.

        Usage:

        >>>  diag = Diagram(source)

        source can be a base relation object, a base relation class, a schema, or a module that has a schema.

        >>> diag.draw()

        draws the diagram using pyplot

        diag1 + diag2  - combines the two diagrams.
        diag + n   - expands n levels of successors
        diag - n   - expands n levels of predecessors
        Thus dj.Diagram(schema.Table)+1-1 defines the diagram of immediate ancestors and descendants of schema.Table

        Note that diagram + 1 - 1  may differ from diagram - 1 + 1 and so forth.
        Only those tables that are loaded in the connection object are displayed
        """

        def __init__(self, source, context=None):

            if isinstance(source, Diagram):
                # copy constructor
                self.nodes_to_show = set(source.nodes_to_show)
                self.context = source.context
                super().__init__(source)
                return

            # get the caller's context
            if context is None:
                frame = inspect.currentframe().f_back
                self.context = dict(frame.f_globals, **frame.f_locals)
                del frame
            else:
                self.context = context

            # find connection in the source
            try:
                connection = source.connection
            except AttributeError:
                try:
                    connection = source.schema.connection
                except AttributeError:
                    raise DataJointError(
                        "Could not find database connection in %s" % repr(source[0])
                    )

            # initialize graph from dependencies
            connection.dependencies.load()
            super().__init__(connection.dependencies)

            # Enumerate nodes from all the items in the list
            self.nodes_to_show = set()
            try:
                self.nodes_to_show.add(source.full_table_name)
            except AttributeError:
                try:
                    database = source.database
                except AttributeError:
                    try:
                        database = source.schema.database
                    except AttributeError:
                        raise DataJointError(
                            "Cannot plot Diagram for %s" % repr(source)
                        )
                for node in self:
                    if node.startswith("`%s`" % database):
                        self.nodes_to_show.add(node)

        @classmethod
        def from_sequence(cls, sequence):
            """
            The join Diagram for all objects in sequence

            :param sequence: a sequence (e.g. list, tuple)
            :return: Diagram(arg1) + ... + Diagram(argn)
            """
            return functools.reduce(lambda x, y: x + y, map(Diagram, sequence))

        def add_parts(self):
            """
            Adds to the diagram the part tables of tables already included in the diagram
            :return:
            """

            def is_part(part, master):
                """
                :param part:  `database`.`table_name`
                :param master:   `database`.`table_name`
                :return: True if part is part of master.
                """
                part = [s.strip("`") for s in part.split(".")]
                master = [s.strip("`") for s in master.split(".")]
                return (
                    master[0] == part[0]
                    and master[1] + "__" == part[1][: len(master[1]) + 2]
                )

            self = Diagram(self)  # copy
            self.nodes_to_show.update(
                n
                for n in self.nodes()
                if any(is_part(n, m) for m in self.nodes_to_show)
            )
            return self

        def topological_sort(self):
            """:return:  list of nodes in topological order"""
            return unite_master_parts(
                list(
                    nx.algorithms.dag.topological_sort(
                        nx.DiGraph(self).subgraph(self.nodes_to_show)
                    )
                )
            )

        def __add__(self, arg):
            """
            :param arg: either another Diagram or a positive integer.
            :return: Union of the diagrams when arg is another Diagram
                     or an expansion downstream when arg is a positive integer.
            """
            self = Diagram(self)  # copy
            try:
                self.nodes_to_show.update(arg.nodes_to_show)
            except AttributeError:
                try:
                    self.nodes_to_show.add(arg.full_table_name)
                except AttributeError:
                    for i in range(arg):
                        new = nx.algorithms.boundary.node_boundary(
                            self, self.nodes_to_show
                        )
                        if not new:
                            break
                        # add nodes referenced by aliased nodes
                        new.update(
                            nx.algorithms.boundary.node_boundary(
                                self, (a for a in new if a.isdigit())
                            )
                        )
                        self.nodes_to_show.update(new)
            return self

        def __sub__(self, arg):
            """
            :param arg: either another Diagram or a positive integer.
            :return: Difference of the diagrams when arg is another Diagram or
                     an expansion upstream when arg is a positive integer.
            """
            self = Diagram(self)  # copy
            try:
                self.nodes_to_show.difference_update(arg.nodes_to_show)
            except AttributeError:
                try:
                    self.nodes_to_show.remove(arg.full_table_name)
                except AttributeError:
                    for i in range(arg):
                        graph = nx.DiGraph(self).reverse()
                        new = nx.algorithms.boundary.node_boundary(
                            graph, self.nodes_to_show
                        )
                        if not new:
                            break
                        # add nodes referenced by aliased nodes
                        new.update(
                            nx.algorithms.boundary.node_boundary(
                                graph, (a for a in new if a.isdigit())
                            )
                        )
                        self.nodes_to_show.update(new)
            return self

        def __mul__(self, arg):
            """
            Intersection of two diagrams
            :param arg: another Diagram
            :return: a new Diagram comprising nodes that are present in both operands.
            """
            self = Diagram(self)  # copy
            self.nodes_to_show.intersection_update(arg.nodes_to_show)
            return self

        def _make_graph(self):
            """
            Make the self.graph - a graph object ready for drawing
            """
            # mark "distinguished" tables, i.e. those that introduce new primary key
            # attributes
            for name in self.nodes_to_show:
                foreign_attributes = set(
                    attr
                    for p in self.in_edges(name, data=True)
                    for attr in p[2]["attr_map"]
                    if p[2]["primary"]
                )
                self.nodes[name]["distinguished"] = (
                    "primary_key" in self.nodes[name]
                    and foreign_attributes < self.nodes[name]["primary_key"]
                )
            # include aliased nodes that are sandwiched between two displayed nodes
            gaps = set(
                nx.algorithms.boundary.node_boundary(self, self.nodes_to_show)
            ).intersection(
                nx.algorithms.boundary.node_boundary(
                    nx.DiGraph(self).reverse(), self.nodes_to_show
                )
            )
            nodes = self.nodes_to_show.union(a for a in gaps if a.isdigit)
            # construct subgraph and rename nodes to class names
            graph = nx.DiGraph(nx.DiGraph(self).subgraph(nodes))
            nx.set_node_attributes(
                graph, name="node_type", values={n: _get_tier(n) for n in graph}
            )
            # relabel nodes to class names
            mapping = {
                node: lookup_class_name(node, self.context) or node
                for node in graph.nodes()
            }
            new_names = [mapping.values()]
            if len(new_names) > len(set(new_names)):
                raise DataJointError(
                    "Some classes have identical names. The Diagram cannot be plotted."
                )
            nx.relabel_nodes(graph, mapping, copy=False)
            return graph

        def make_dot(self):

            graph = self._make_graph()
            graph.nodes()

            scale = 1.2  # scaling factor for fonts and boxes
            label_props = {  # http://matplotlib.org/examples/color/named_colors.html
                None: dict(
                    shape="circle",
                    color="#FFFF0040",
                    fontcolor="yellow",
                    fontsize=round(scale * 8),
                    size=0.4 * scale,
                    fixed=False,
                ),
                _AliasNode: dict(
                    shape="circle",
                    color="#FF880080",
                    fontcolor="#FF880080",
                    fontsize=round(scale * 0),
                    size=0.05 * scale,
                    fixed=True,
                ),
                Manual: dict(
                    shape="box",
                    color="#00FF0030",
                    fontcolor="darkgreen",
                    fontsize=round(scale * 10),
                    size=0.4 * scale,
                    fixed=False,
                ),
                Lookup: dict(
                    shape="plaintext",
                    color="#00000020",
                    fontcolor="black",
                    fontsize=round(scale * 8),
                    size=0.4 * scale,
                    fixed=False,
                ),
                Computed: dict(
                    shape="ellipse",
                    color="#FF000020",
                    fontcolor="#7F0000A0",
                    fontsize=round(scale * 10),
                    size=0.3 * scale,
                    fixed=True,
                ),
                Imported: dict(
                    shape="ellipse",
                    color="#00007F40",
                    fontcolor="#00007FA0",
                    fontsize=round(scale * 10),
                    size=0.4 * scale,
                    fixed=False,
                ),
                Part: dict(
                    shape="plaintext",
                    color="#0000000",
                    fontcolor="black",
                    fontsize=round(scale * 8),
                    size=0.1 * scale,
                    fixed=False,
                ),
            }
            node_props = {
                node: label_props[d["node_type"]]
                for node, d in dict(graph.nodes(data=True)).items()
            }

            dot = nx.drawing.nx_pydot.to_pydot(graph)
            for node in dot.get_nodes():
                node.set_shape("circle")
                name = node.get_name().strip('"')
                props = node_props[name]
                node.set_fontsize(props["fontsize"])
                node.set_fontcolor(props["fontcolor"])
                node.set_shape(props["shape"])
                node.set_fontname("arial")
                node.set_fixedsize("shape" if props["fixed"] else False)
                node.set_width(props["size"])
                node.set_height(props["size"])
                if name.split(".")[0] in self.context:
                    cls = eval(name, self.context)
                    assert issubclass(cls, Table)
                    description = (
                        cls().describe(context=self.context, printout=False).split("\n")
                    )
                    description = (
                        "-" * 30
                        if q.startswith("---")
                        else q.replace("->", "&#8594;")
                        if "->" in q
                        else q.split(":")[0]
                        for q in description
                        if not q.startswith("#")
                    )
                    node.set_tooltip("&#13;".join(description))
                node.set_label(
                    "<<u>" + name + "</u>>"
                    if node.get("distinguished") == "True"
                    else name
                )
                node.set_color(props["color"])
                node.set_style("filled")

            for edge in dot.get_edges():
                # see https://graphviz.org/doc/info/attrs.html
                src = edge.get_source().strip('"')
                dest = edge.get_destination().strip('"')
                props = graph.get_edge_data(src, dest)
                edge.set_color("#00000040")
                edge.set_style("solid" if props["primary"] else "dashed")
                master_part = graph.nodes[dest][
                    "node_type"
                ] is Part and dest.startswith(src + ".")
                edge.set_weight(3 if master_part else 1)
                edge.set_arrowhead("none")
                edge.set_penwidth(0.75 if props["multi"] else 2)

            return dot

        def make_svg(self):
            from IPython.display import SVG

            return SVG(self.make_dot().create_svg())

        def make_png(self):
            return io.BytesIO(self.make_dot().create_png())

        def make_image(self):
            if plot_active:
                return plt.imread(self.make_png())
            else:
                raise DataJointError("pyplot was not imported")

        def _repr_svg_(self):
            return self.make_svg()._repr_svg_()

        def draw(self):
            if plot_active:
                plt.imshow(self.make_image())
                plt.gca().axis("off")
                plt.show()
            else:
                raise DataJointError("pyplot was not imported")

        def save(self, filename, format=None):
            if format is None:
                if filename.lower().endswith(".png"):
                    format = "png"
                elif filename.lower().endswith(".svg"):
                    format = "svg"
            if format.lower() == "png":
                with open(filename, "wb") as f:
                    f.write(self.make_png().getbuffer().tobytes())
            elif format.lower() == "svg":
                with open(filename, "w") as f:
                    f.write(self.make_svg().data)
            else:
                raise DataJointError("Unsupported file format")

        @staticmethod
        def _layout(graph, **kwargs):
            return pydot_layout(graph, prog="dot", **kwargs)

1	import networkx as nx	1✔
2	import re	1✔
3	import functools	1✔
4	import io	1✔
5	import logging	1✔
6	import inspect	1✔
7	from .table import Table	1✔
8	from .dependencies import unite_master_parts	1✔
9	from .user_tables import Manual, Imported, Computed, Lookup, Part	1✔
10	from .errors import DataJointError	1✔
11	from .table import lookup_class_name	1✔
12
13
14	try:	1✔
15	from matplotlib import pyplot as plt	1✔
16
17	plot_active = True	1✔
18	except:	×
19	plot_active = False	×
20
21	try:	1✔
22	from networkx.drawing.nx_pydot import pydot_layout	1✔
23
24	diagram_active = True	1✔
25	except:	×
26	diagram_active = False	×
27
28
29	logger = logging.getLogger(__name__.split(".")[0])	1✔
30	user_table_classes = (Manual, Lookup, Computed, Imported, Part)	1✔
31
32
33	class _AliasNode:	1✔
34	"""
35	special class to indicate aliased foreign keys
36	"""
37
38	pass	1✔
39
40
41	def _get_tier(table_name):	1✔
42	if not table_name.startswith("`"):	1✔
43	return _AliasNode	1✔
44	else:
45	try:	1✔
46	return next(	1✔
47	tier
48	for tier in user_table_classes
49	if re.fullmatch(tier.tier_regexp, table_name.split("`")[-2])
50	)
51	except StopIteration:	×
52	return None	×
53
54
55	if not diagram_active:	1✔
56
57	class Diagram:	×
58	"""
59	Entity relationship diagram, currently disabled due to the lack of required packages: matplotlib and pygraphviz.
60
61	To enable Diagram feature, please install both matplotlib and pygraphviz. For instructions on how to install
62	these two packages, refer to http://docs.datajoint.io/setup/Install-and-connect.html#python and
63	http://tutorials.datajoint.io/setting-up/datajoint-python.html
64	"""
65
66	def __init__(self, args, *kwargs):	×
67	logger.warning(	×
68	"Please install matplotlib and pygraphviz libraries to enable the Diagram feature."
69	)
70
71	else:
72
73	class Diagram(nx.DiGraph):	1✔
74	"""
75	Entity relationship diagram.
76
77	Usage:
78
79	>>> diag = Diagram(source)
80
81	source can be a base relation object, a base relation class, a schema, or a module that has a schema.
82
83	>>> diag.draw()
84
85	draws the diagram using pyplot
86
87	diag1 + diag2 - combines the two diagrams.
88	diag + n - expands n levels of successors
89	diag - n - expands n levels of predecessors
90	Thus dj.Diagram(schema.Table)+1-1 defines the diagram of immediate ancestors and descendants of schema.Table
91
92	Note that diagram + 1 - 1 may differ from diagram - 1 + 1 and so forth.
93	Only those tables that are loaded in the connection object are displayed
94	"""
95
96	def __init__(self, source, context=None):	1✔
97
98	if isinstance(source, Diagram):	1✔
99	# copy constructor
100	self.nodes_to_show = set(source.nodes_to_show)	1✔
101	self.context = source.context	1✔
102	super().__init__(source)	1✔
103	return	1✔
104
105	# get the caller's context
106	if context is None:	1✔
107	frame = inspect.currentframe().f_back	1✔
108	self.context = dict(frame.f_globals, **frame.f_locals)	1✔
109	del frame	1✔
110	else:
111	self.context = context	1✔
112
113	# find connection in the source
114	try:	1✔
115	connection = source.connection	1✔
116	except AttributeError:	1✔
117	try:	1✔
118	connection = source.schema.connection	1✔
119	except AttributeError:	×
120	raise DataJointError(	×
121	"Could not find database connection in %s" % repr(source[0])
122	)
123
124	# initialize graph from dependencies
125	connection.dependencies.load()	1✔
126	super().__init__(connection.dependencies)	1✔
127
128	# Enumerate nodes from all the items in the list
129	self.nodes_to_show = set()	1✔
130	try:	1✔
131	self.nodes_to_show.add(source.full_table_name)	1✔
132	except AttributeError:	1✔
133	try:	1✔
134	database = source.database	1✔
135	except AttributeError:	1✔
136	try:	1✔
137	database = source.schema.database	1✔
138	except AttributeError:	×
139	raise DataJointError(	×
140	"Cannot plot Diagram for %s" % repr(source)
141	)
142	for node in self:	1✔
143	if node.startswith("`%s`" % database):	1✔
144	self.nodes_to_show.add(node)	1✔
145
146	@classmethod	1✔
147	def from_sequence(cls, sequence):	1✔
148	"""
149	The join Diagram for all objects in sequence
150
151	:param sequence: a sequence (e.g. list, tuple)
152	:return: Diagram(arg1) + ... + Diagram(argn)
153	"""
154	return functools.reduce(lambda x, y: x + y, map(Diagram, sequence))	×
155
156	def add_parts(self):	1✔
157	"""
158	Adds to the diagram the part tables of tables already included in the diagram
159	:return:
160	"""
161
162	def is_part(part, master):	1✔
163	"""
164	:param part: `database`.`table_name`
165	:param master: `database`.`table_name`
166	:return: True if part is part of master.
167	"""
168	part = [s.strip("`") for s in part.split(".")]	1✔
169	master = [s.strip("`") for s in master.split(".")]	1✔
170	return (	1✔
171	master[0] == part[0]
172	and master[1] + "__" == part[1][: len(master[1]) + 2]
173	)
174
175	self = Diagram(self) # copy	1✔
176	self.nodes_to_show.update(	1✔
177	n
178	for n in self.nodes()
179	if any(is_part(n, m) for m in self.nodes_to_show)
180	)
181	return self	1✔
182
183	def topological_sort(self):	1✔
184	""":return: list of nodes in topological order"""
185	return unite_master_parts(	1✔
186	list(
187	nx.algorithms.dag.topological_sort(
188	nx.DiGraph(self).subgraph(self.nodes_to_show)
189	)
190	)
191	)
192
193	def __add__(self, arg):	1✔
194	"""
195	:param arg: either another Diagram or a positive integer.
196	:return: Union of the diagrams when arg is another Diagram
197	or an expansion downstream when arg is a positive integer.
198	"""
199	self = Diagram(self) # copy	1✔
200	try:	1✔
201	self.nodes_to_show.update(arg.nodes_to_show)	1✔
202	except AttributeError:	1✔
203	try:	1✔
204	self.nodes_to_show.add(arg.full_table_name)	1✔
205	except AttributeError:	1✔
206	for i in range(arg):	1✔
207	new = nx.algorithms.boundary.node_boundary(	1✔
208	self, self.nodes_to_show
209	)
210	if not new:	1✔
211	break	1✔
212	# add nodes referenced by aliased nodes
213	new.update(	1✔
214	nx.algorithms.boundary.node_boundary(
215	self, (a for a in new if a.isdigit())
216	)
217	)
218	self.nodes_to_show.update(new)	1✔
219	return self	1✔
220
221	def __sub__(self, arg):	1✔
222	"""
223	:param arg: either another Diagram or a positive integer.
224	:return: Difference of the diagrams when arg is another Diagram or
225	an expansion upstream when arg is a positive integer.
226	"""
227	self = Diagram(self) # copy	1✔
228	try:	1✔
229	self.nodes_to_show.difference_update(arg.nodes_to_show)	1✔
230	except AttributeError:	1✔
231	try:	1✔
232	self.nodes_to_show.remove(arg.full_table_name)	1✔
233	except AttributeError:	1✔
234	for i in range(arg):	1✔
235	graph = nx.DiGraph(self).reverse()	1✔
236	new = nx.algorithms.boundary.node_boundary(	1✔
237	graph, self.nodes_to_show
238	)
239	if not new:	1✔
240	break	1✔
241	# add nodes referenced by aliased nodes
242	new.update(	1✔
243	nx.algorithms.boundary.node_boundary(
244	graph, (a for a in new if a.isdigit())
245	)
246	)
247	self.nodes_to_show.update(new)	1✔
248	return self	1✔
249
250	def __mul__(self, arg):	1✔
251	"""
252	Intersection of two diagrams
253	:param arg: another Diagram
254	:return: a new Diagram comprising nodes that are present in both operands.
255	"""
256	self = Diagram(self) # copy	1✔
257	self.nodes_to_show.intersection_update(arg.nodes_to_show)	1✔
258	return self	1✔
259
260	def _make_graph(self):	1✔
261	"""
262	Make the self.graph - a graph object ready for drawing
263	"""
264	# mark "distinguished" tables, i.e. those that introduce new primary key
265	# attributes
266	for name in self.nodes_to_show:	1✔
267	foreign_attributes = set(	1✔
268	attr
269	for p in self.in_edges(name, data=True)
270	for attr in p[2]["attr_map"]
271	if p[2]["primary"]
272	)
273	self.nodes[name]["distinguished"] = (	1✔
274	"primary_key" in self.nodes[name]
275	and foreign_attributes < self.nodes[name]["primary_key"]
276	)
277	# include aliased nodes that are sandwiched between two displayed nodes
278	gaps = set(	1✔
279	nx.algorithms.boundary.node_boundary(self, self.nodes_to_show)
280	).intersection(
281	nx.algorithms.boundary.node_boundary(
282	nx.DiGraph(self).reverse(), self.nodes_to_show
283	)
284	)
285	nodes = self.nodes_to_show.union(a for a in gaps if a.isdigit)	1✔
286	# construct subgraph and rename nodes to class names
287	graph = nx.DiGraph(nx.DiGraph(self).subgraph(nodes))	1✔
288	nx.set_node_attributes(	1✔
289	graph, name="node_type", values={n: _get_tier(n) for n in graph}
290	)
291	# relabel nodes to class names
292	mapping = {	1✔
293	node: lookup_class_name(node, self.context) or node
294	for node in graph.nodes()
295	}
296	new_names = [mapping.values()]	1✔
297	if len(new_names) > len(set(new_names)):	1✔
298	raise DataJointError(	×
299	"Some classes have identical names. The Diagram cannot be plotted."
300	)
301	nx.relabel_nodes(graph, mapping, copy=False)	1✔
302	return graph	1✔
303
304	def make_dot(self):	1✔
305
306	graph = self._make_graph()	1✔
307	graph.nodes()	1✔
308
309	scale = 1.2 # scaling factor for fonts and boxes	1✔
310	label_props = { # http://matplotlib.org/examples/color/named_colors.html	1✔
311	None: dict(
312	shape="circle",
313	color="#FFFF0040",
314	fontcolor="yellow",
315	fontsize=round(scale * 8),
316	size=0.4 * scale,
317	fixed=False,
318	),
319	_AliasNode: dict(
320	shape="circle",
321	color="#FF880080",
322	fontcolor="#FF880080",
323	fontsize=round(scale * 0),
324	size=0.05 * scale,
325	fixed=True,
326	),
327	Manual: dict(
328	shape="box",
329	color="#00FF0030",
330	fontcolor="darkgreen",
331	fontsize=round(scale * 10),
332	size=0.4 * scale,
333	fixed=False,
334	),
335	Lookup: dict(
336	shape="plaintext",
337	color="#00000020",
338	fontcolor="black",
339	fontsize=round(scale * 8),
340	size=0.4 * scale,
341	fixed=False,
342	),
343	Computed: dict(
344	shape="ellipse",
345	color="#FF000020",
346	fontcolor="#7F0000A0",
347	fontsize=round(scale * 10),
348	size=0.3 * scale,
349	fixed=True,
350	),
351	Imported: dict(
352	shape="ellipse",
353	color="#00007F40",
354	fontcolor="#00007FA0",
355	fontsize=round(scale * 10),
356	size=0.4 * scale,
357	fixed=False,
358	),
359	Part: dict(
360	shape="plaintext",
361	color="#0000000",
362	fontcolor="black",
363	fontsize=round(scale * 8),
364	size=0.1 * scale,
365	fixed=False,
366	),
367	}
368	node_props = {	1✔
369	node: label_props[d["node_type"]]
370	for node, d in dict(graph.nodes(data=True)).items()
371	}
372
373	dot = nx.drawing.nx_pydot.to_pydot(graph)	1✔
374	for node in dot.get_nodes():	1✔
375	node.set_shape("circle")	1✔
376	name = node.get_name().strip('"')	1✔
377	props = node_props[name]	1✔
378	node.set_fontsize(props["fontsize"])	1✔
379	node.set_fontcolor(props["fontcolor"])	1✔
380	node.set_shape(props["shape"])	1✔
381	node.set_fontname("arial")	1✔
382	node.set_fixedsize("shape" if props["fixed"] else False)	1✔
383	node.set_width(props["size"])	1✔
384	node.set_height(props["size"])	1✔
385	if name.split(".")[0] in self.context:	1✔
386	cls = eval(name, self.context)	1✔
387	assert issubclass(cls, Table)	1✔
388	description = (	1✔
389	cls().describe(context=self.context, printout=False).split("\n")
390	)
391	description = (	1✔
392	"-" * 30
393	if q.startswith("---")
394	else q.replace("->", "→")
395	if "->" in q
396	else q.split(":")[0]
397	for q in description
398	if not q.startswith("#")
399	)
400	node.set_tooltip(" ".join(description))	1✔
401	node.set_label(	1✔
402	"<<u>" + name + "</u>>"
403	if node.get("distinguished") == "True"
404	else name
405	)
406	node.set_color(props["color"])	1✔
407	node.set_style("filled")	1✔
408
409	for edge in dot.get_edges():	1✔
410	# see https://graphviz.org/doc/info/attrs.html
411	src = edge.get_source().strip('"')	1✔
412	dest = edge.get_destination().strip('"')	1✔
413	props = graph.get_edge_data(src, dest)	1✔
414	edge.set_color("#00000040")	1✔
415	edge.set_style("solid" if props["primary"] else "dashed")	1✔
416	master_part = graph.nodes[dest][	1✔
417	"node_type"
418	] is Part and dest.startswith(src + ".")
419	edge.set_weight(3 if master_part else 1)	1✔
420	edge.set_arrowhead("none")	1✔
421	edge.set_penwidth(0.75 if props["multi"] else 2)	1✔
422
423	return dot	1✔
424
425	def make_svg(self):	1✔
426	from IPython.display import SVG	1✔
427
428	return SVG(self.make_dot().create_svg())	1✔
429
430	def make_png(self):	1✔
431	return io.BytesIO(self.make_dot().create_png())	1✔
432
433	def make_image(self):	1✔
434	if plot_active:	1✔
435	return plt.imread(self.make_png())	1✔
436	else:
437	raise DataJointError("pyplot was not imported")	×
438
439	def _repr_svg_(self):	1✔
440	return self.make_svg()._repr_svg_()	1✔
441
442	def draw(self):	1✔
443	if plot_active:	×
444	plt.imshow(self.make_image())	×
445	plt.gca().axis("off")	×
446	plt.show()	×
447	else:
448	raise DataJointError("pyplot was not imported")	×
449
450	def save(self, filename, format=None):	1✔
451	if format is None:	×
452	if filename.lower().endswith(".png"):	×
453	format = "png"	×
454	elif filename.lower().endswith(".svg"):	×
455	format = "svg"	×
456	if format.lower() == "png":	×
457	with open(filename, "wb") as f:	×
458	f.write(self.make_png().getbuffer().tobytes())	×
459	elif format.lower() == "svg":	×
460	with open(filename, "w") as f:	×
461	f.write(self.make_svg().data)	×
462	else:
463	raise DataJointError("Unsupported file format")	×
464
465	@staticmethod	1✔
466	def _layout(graph, **kwargs):	1✔
467	return pydot_layout(graph, prog="dot", **kwargs)	×

datajoint / datajoint-python / #12466

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source File
Press 'n' to go to next uncovered line, 'b' for previous