1442

pending completion

Build # 1442

Build Type

Pull #383

travis-ci

Committed by

droazen

Commit Message

Encode genotypes automatically in VariantBuilder instead of requiring the client to call Genotype::encode_genotype()

-VariantBuilder genotype setters now call appropriate Genotype::encode_genotype() function for you.

-Updated tests/documentation accordingly.

-Added some additional move semantics to per-sample genotype setters to allow clients to avoid extra copies
 when they don't need to re-use their genotype data.

-Added disclaimers to Genotype::encode_genotype() functions that they should only be called directly
 if you are working with low-level BCF data, and not when using VariantBuilder.

-Specifying phasing is still an issue, but will be addressed separately in #373

Resolves #371

Pull Request Pull Request #383: Encode genotypes automatically in VariantBuilder instead of requiring the client to call Genotype::encode_genotype()

Run Details

21 of 21 new or added lines in 2 files covered. (100.0%)

2671 of 2981 relevant lines covered (89.6%)

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36.59

/build/contrib/htslib/src/htslib/htslib/vcf.h

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The file "build/contrib/htslib/src/htslib/htslib/vcf.h" isn't available on github. Either it's been removed, or the repo root directory needs to be updated.

broadinstitute / gamgee / 1442

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