gyrokinetics / gs2

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• bugfix/fixup_docs_building_after_python_generator_changes
• 8.0.6-RC
• 8.1.1-RC
• 8.2.0-RC
• 8.2.1-RC
• 8.2.2-RC
• HEAD
• backports/backport_netcdf_kperp2_output_to_8.1.2
• better-diagnostics-ascii-tests
• bugfix/add_missing_vnmult_factor_in_le_conserve_diffuse
• bugfix/always_use_nxi_lim_in_collisions_fix_for_slab
• bugfix/avoid_potentially_unused_variables_in_ingen
• bugfix/change_init_order_in_ingen_mod
• bugfix/correct_2d_cfl_limit
• bugfix/energy-exchange-diagnostics
• bugfix/ensure_both_diagnostics_modules_have_config_setup
• bugfix/ensure_duinv_always_fully_initialised
• bugfix/ensure_fields_implicit_esv_always_uses_force
• bugfix/ensure_procs_with_no_data_dont_break_max_abs_reduce
• bugfix/ensure_we_can_handle_restart_file_writing_when_procs_have_no_data
• bugfix/ensure_we_capture_dependencies_from_include_files
• bugfix/ensure_we_use_workaround_for_gfortran_polymorphic_argument_issue_with_neasyf
• bugfix/expand_response_matrix_test
• bugfix/fix_documentation_of_nc_sync_freq
• bugfix/fix_issue_242_and_save_build_config_to_netcdf_output
• bugfix/fix_issue_271_odd_ntheta_input
• bugfix/fix_nmesh_type
• bugfix/fixup_ability_to_compile_with_lowflow_on
• bugfix/fixup_more_warnings_in_advance_of_8p2
• bugfix/fixup_radial_derivatives_in_mxh_geometry
• bugfix/generalise_change_log_builder_slightly
• bugfix/guard_against_iset_equal_zero
• bugfix/guard_warnings_with_proc0
• bugfix/improve_handling_of_pfunit_v4_in_ci_etc
• bugfix/increase_default_cfl_factor_to_account_for_cfl_calculation_change
• bugfix/make_sure_imports_at_all_levels_in_eigval
• bugfix/make_sure_multigs2_actually_times_jobs
• bugfix/make_sure_pfunit_failure_fails_ci
• bugfix/make_sure_unit_is_set_in_nc_grids_file
• bugfix/minor_ensure_job_id_is_set_as_early_as_possible
• bugfix/old-gmake-support
• bugfix/out_of_bounds_in_collisions
• bugfix/reintroduce_guidance_on_makeflags_as_not_supported_in_older_make
• bugfix/remove_use_of_imag_extension
• bugfix/scale_apar_m_by_fapar
• bugfix/sort-files-compare-response
• bugfix/update_petsc_slepc_versions_3_22_1
• bugfix/update_slepc_epstype_usage_to_avoid_issues_with_ifx
• bugfix/update_unit_test_makefiles_for_more_cleaning
• bugfix/use_uv_in_coverage_test_to_install_packages
• bugfix/write_epar_to_new_diagnostics_netcdf_file
• cleanup/rearrange_some_trinity_inputs
• cleanup/remove_gryfx_references
• experimental/abort_if_parameters_namelist_present
• experimental/add_tree_sitter_based_dependency_script
• experimental/add_tree_sitter_based_dependency_script_more_functions
• experimental/avoid_treating_wfb_as_passing_in_conservative_lorentz_vpdiff
• experimental/change_linear_upwind_apar_term
• experimental/entropy-transfer-diagnostic
• experimental/entropy-transfer-diagnostic-efficiency
• experimental/entropy-transfer-diagnostic-efficiency-no-mediator
• experimental/explore_fixes_to_collisional_conservation
• experimental/explore_pre_existing_cache_in_ci
• experimental/exponential_decay_boundaries
• experimental/fields_eigval
• experimental/generate_config_collection_module
• experimental/hacky_nl_strang_split
• experimental/limit_vpar_zero_mean_to_wfb_only
• experimental/make_python_a_hard_requirement_config_auto_gen
• experimental/pre_calculate_indices
• experimental/reduce_time_averaged_field_overhead_in_source_calculation_expt
• experimental/remove_parameter_scan_modules
• experimental/remove_ulim_alloc
• experimental/report_unused_processors
• experimental/switch_to_ifx_in_ci
• experimental/try_to_address_bref_choice_conservation_related_drift
• feature/add_fortran_standards_flag_to_a_couple_of_ci_jobs
• feature/add_multigs2_runner_as_cleaner_implementation_of_gs2_queue
• feature/add_standards_check_to_intel_ci_build
• feature/allow_user_control_of_stop_check_frequency
• feature/auto_generate_config_for_includes
• feature/avoid_duplicate_points_early_in_gridgen
• feature/config_smart_defaults_more_unified_structure
• feature/copy_config_comments_to_generated_namelists_to_get_complete_docs
• feature/eiktest_mods
• feature/generate_copy_out_code_for_configs_to_get_compile_time_error_if_forget_to_add
• feature/geo_isolation_type_based_geos
• feature/init-noise-spectrum
• feature/kinetic_energy_transfer_diagnostic
• feature/make_ci_cache_depend_on_branch_name
• feature/make_python_a_hard_requirement
• feature/multi_list_mode_dynamic_queue
• feature/mxh-eq
• feature/place_parallel_boundary_off_grid
• feature/progress_status_messages
• feature/remove-one-step-pp
• feature/split_collisions_fields_from_nonadiabatic_dfn
• feature/try_to_optimise_collision_conservation_terms_in_le_lo
• feature/update_ci_versions_fedora_37_to_39
• feature/update_ci_versions_fedora_to_39
• feature/update_gfortran9_to_gfortran10_in_ci
• feature/update_to_fftw3_modern_interface
• feature/use_protected_rather_than_public
• feature/use_real_type_for_coefficients_in_collisions_setup
• feature/zonal-flow-benchmark
• master
• micro/optimisations_in_opt_source_routines_guided_by_intel_advisor
• minor/add_small_clarification_in_config_docs
• minor/add_some_comments_and_tweaks_around_sdanalytic
• minor/add_some_comments_to_get_weights_le_grids
• minor/allow_mult_imp_in_linear_and_disable_in_nonlinear
• minor/avoid_allocating_c_rate_when_not_collisional
• minor/avoid_duplication_in_collisions_from_select_case
• minor/calculate_sourcefac_at_lower_level
• minor/change_extent_of_wdrift_array_as_centred
• minor/change_how_we_set_kt_grids_specified_size
• minor/consistent_run_name_size_usage
• minor/deprecate_lowflow
• minor/dont_keep_scratch_files
• minor/dont_mark_layout_types_as_sequence
• minor/dont_pass_hee_out_of_init_vnew
• minor/dont_put_test_modules_in_include
• minor/enable_early_file_safety_check_for_issue_252
• minor/ensure_experimental_gs2_memory_tracking_can_be_enabled
• minor/ensure_t_wstar_always_available
• minor/fix_some_broken_links_and_formatting_in_docs
• minor/fix_some_warnings
• minor/fix_two_warnings_in_init_g
• minor/fixup_build_tests_no_dependencies
• minor/fixup_some_fortitude_suggested_warnings
• minor/fixup_some_fortitude_warnings
• minor/fixup_some_more_warnings
• minor/force_standards_compliance_in_ci_build
• minor/gs2-save-neasyf
• minor/ignore_test_used_inputs_files
• minor/improve_progress_eta_slightly
• minor/improve_python_package_handling_in_ci
• minor/interim_handling_for_cray_with_onestep
• minor/link_genquad_and_use_lapack
• minor/make_diagnostics_handle_value_of_heating_in_collisions
• minor/more_neasyf_in_gs2_save
• minor/move_c_rate_to_collisions
• minor/move_get_flux_vs_theta_vs_vpa_to_diagnostics
• minor/pull_some_logic_out_of_invert_rhs_1_loop
• minor/put_all_layout_types_in_same_module
• minor/reduce_duplication_in_test_makefiles
• minor/reduce_glec_scope_in_collisions
• minor/reduce_memory_overhead_of_geo_type
• minor/reduce_scope_of_increase_decrease_in_dist_fn
• minor/reduce_use_of_present
• minor/reduce_visibility_of_layout_type_data
• minor/reduce_warnings_for_no_netcdf_build
• minor/refactor_functional_test_for_old_diagnostics_slightly
• minor/remove_deprecated_faperp_input
• minor/remove_deprecated_margin_input
• minor/remove_deprecated_teti
• minor/remove_deprecated_wfbbc_option_in_dist_fn
• minor/remove_duplicate_rungridgen_comment
• minor/remove_fexpi_and_make_fexp_real
• minor/remove_ginit_restart_memory
• minor/remove_gridfac
• minor/remove_init_knobs_namelist
• minor/remove_le_nxilim_fix_input
• minor/remove_nl_forbid_force_zero
• minor/remove_old_unused_script
• minor/remove_older_ball_code_in_favour_of_ideal_ball
• minor/remove_parameters_namelist_in_favour_of_knobs
• minor/remove_some_internal_unused_switches_in_dist_fn
• minor/remove_some_unused_integration_implementations
• minor/remove_some_unused_makefile_settings
• minor/remove_some_unused_wnml_routines
• minor/remove_unused_bitbucket_pipelines_config
• minor/remove_unused_code_from_gridgen_smoothing
• minor/remove_unused_g_exb_error_limit_input
• minor/remove_unused_le_grids_public
• minor/remove_unused_trinity_species_routines
• minor/remove_unused_variable_from_hyper
• minor/remove_use_of_spfunc_and_associated_make_variables
• minor/remove_uses_of_erf_ext_in_favour_of_language_standard
• minor/remove_warnings_and_errors_in_genquad
• minor/remove_warnings_in_lowflow
• minor/remove_zero_forbid_in_distfn
• minor/replace_boundary_with_linked_boundary_function
• minor/restrict_gs2_diagnostics_visibility
• minor/save_memory_associated_with_hyper_collisions
• minor/share_more_code_between_fields_local_and_fields_gf_local
• minor/simplify_species_parameter_broadcasts
• minor/simplify_vspace_derivatives_slightly
• minor/slight_collisions_tweaks_to_cache_some_results_etc
• minor/slight_optimisation_in_eqitem_to_reduce_copying
• minor/slight_optimisation_to_lorentz_conservation_calculation_for_no_drag
• minor/slight_performance_tweaks_to_diagnostics_fluxes
• minor/slight_performance_tweaks_to_g_adjust
• minor/slight_performance_tweaks_to_invert_rhs_1
• minor/small_refactor_to_theta_grids_params_message_to_avoid_issue_with_cray
• minor/small_tweaks_in_gs2_diagnostics
• minor/small_tweaks_to_conserve_collision_terms
• minor/small_tweaks_to_preprocess_fortdep_make
• minor/split_multi_module_files
• minor/swap_dimension_order_in_ixi_to_il_and_related_to_improve_memory_access_pattern
• minor/swap_dimension_order_in_pitch_weights_for_better_access
• minor/tidy_up_gridgen_slightly
• minor/tidy_up_some_more_warnings
• minor/tidyup_le_grids_use_statements_etc
• minor/tidyup_makefile_for_8p2_prep
• minor/tidyup_some_collisions_code_removing_commented_out_parts_and_improving_consistency
• minor/tidyup_use_of_tunits_in_collisions
• minor/try_to_support_old_and_new_ford
• minor/try_to_tidyup_integrate_kysum_slightly
• minor/tweak-make-depend
• minor/tweak_calls_to_init_species
• minor/tweak_mxh_inputs_to_remove_c0_mxh
• minor/update-makefiles-compiler-variables
• minor/update_dump_grids_to_reuse_gs2_io
• minor/update_mpich_ci_build_to_f40
• minor/update_next_for_spline_changes
• minor/update_output_of_species_parameters_to_capture_changes
• minor/update_pfunit_to_v4_10
• minor/update_utils_and_fix_gs2_for_removal_of_trin_flags
• minor/use-flush-statement
• minor/use_specific_wisdom_file_name_size_for_consistency
• minor/use_xi_compatible_weights_layout
• next
• optimize-raijin-by-nec
• removal/remove_lowflow_as_not_actively_maintained
• silence-more-warnings

Make sure python generated files exist before making docs