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• feature/vcfparser_recipe_fix
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• feature/bwa_mem2_update
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• 1697/merge
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• feature/recipe_template
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• feature/update_picard
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• feature/rm_split_fastq_file
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• feature/add_percentage_mapped_reads_from_samtool
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• feature/rename_arriba_contigs
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• feature/pdfmerger
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• feature/generate_readable_commands
• feature/bwa-mem2
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• feature/update_smncopynumbercaller
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• feature/deepvariant_housekeeper_integration
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• feature/bcftools_norm_fix_reference
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• feature/bwa-mem2_update
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• feature/splice_junction_tracks
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• feature/rename_quant_file
• feature/rna_resource_bump
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• feature/fix_gatk_combine_cli
• feature/update_svdb
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• feature/update_gatk
• feature/rna_vcfparser
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• feature/star_update
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• feature/update_vep
• feature/deliverable_update
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• feature/arriba_update
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• feature/rna_genome_ref
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• feature/megafusion_update
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• feature/update_starfusion
• feature/update_reference
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• feature/gencode_transcripts
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• feature/bedtools
• feature/rna_doc
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• feature/delly_update
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• feature/glnexus
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• feature/htslib
• feature/multiqc
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• feature/bcftools_norm_cov
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• feature/preseq
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• feature/rseqc
• feature/rtg-tools
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• feature/salmon
• feature/upd
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• feature/update_rna_template
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• feature/chromograph
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• feature/blobfish
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• feature/rseqc_build
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• feature/bcftools_norm_update
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• feature/rna_qc_mestrics
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• feature/clinvar_ref
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• release/10.0.0
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• feature/fix_deepvariant_version_typo
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• feature/no_atomize
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• feature/bcftools_norm_recipe
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• feature/info_download
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• feature/rna_mt_contig
• feature/norm_rna_and_mt
• 1900/merge
• feature/recipe_bind_path_mod
• 1901/merge
• feature/norm_glnexus
• 1902/merge
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• feature/rollback_telomercat
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• feature/cadd_index
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• feature/htslib_rollback
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• feature/bcftools_base
• v10.0.0
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• release/10.0.1
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• v10.0.1
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• feature/gnomad_mt
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• v10.0.2
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• feature/set_resources
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• feature/update_download_paths
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• feature/qc_collect_deliverable
• feature/start_after_recipe
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• feature/start_after_recipe_flag
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• feature/gnu_awk
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• v10.1.0
• v10.2.0
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• feature/deactivate_gatk
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• feature/limit_qc
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• feature/ghcr_uri
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• feat/fix_glnexus_permission
• 1946/merge
• hmtnote/quickfix
• hotfix/mt_filter
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• feature/local_images
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• v10.2.1
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• feature/sv_freq_filter
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• feature/references
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• feature/hmtnote_version_regex
• feature/fixing_loqus_headers
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• feature/trim_mt_anno_whitespace
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• feature/change_to_bcftools_concat
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• feature/more_qc_metrics
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• feature/increased_AF_cutoff
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• feature/paper_and_redirection
• feature/fixing_test_coverage
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• release/11.0.0
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• feature/gens
• gens
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• feature/gens_install
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• release/10.2.3
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• v10.2.3
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• feature/gatk_for_mt
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• release/10.2.5
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• v11.0.0
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• v11.0.1
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• upd_on_unaffected_children
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• expansionhunter_5
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• svdb_update
• feature/gens_preproc_container_fix
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• feature/gens_preproc_version_1.0.2
• updating_programs
• 1996/merge
• update_databases
• 1998/merge
• fixes_before_mip11.1
• 1999/merge
• mip11.0.2
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• v11.0.2
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• release/mip11.1
• release/11.0.3
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• v11.0.3
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• v11.1.0
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• release/11.1.1
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• v11.1.1
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• tiddit_update
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• exphun_catalog_update
• salmon_memory
• 2010/merge
• 2011/merge
• bump_rna_mergesamfiles_mem
• 2012/merge
• update_megafusion
• 2013/merge
• remove_rseqc_read_duplication
• release/11.2.0
• 2014/merge
• release/11.1.2
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• v11.1.2
• feature/fixing_gens_index
• 2018/merge
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• release/11.1.3
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• v11.1.3
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• retroseq_recipe
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• me_merge_vcf
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• annotate_me
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• vep_me
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• remove_exon_anno
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• clinvar_update
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• release/12.0.0
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• v12.0.0
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• 2050/merge
• update_codeowners
• vcf_rerun
• annotate-clinvar-dataset

feat(vcfparser): moved copy of mt variants