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• feature/fix_gatk_combine_cli
• develop
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• no_samtools_view
• feature/read_install_config
• feature/bwa_mem2_update
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• feature/plink_fixes
• 1697/merge
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• 1712/merge
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• 1715/merge
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• 1716/merge
• 1717/merge
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• 1718/merge
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• 1720/merge
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• 1723/merge
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• 1725/merge
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• 1726/merge
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• 1728/merge
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• 1730/merge
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• 1731/merge
• 1732/merge
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• 1733/merge
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• 1734/merge
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• 1737/merge
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• 1766/merge
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• 1767/merge
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• 1791/merge
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• 1793/merge
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• 1796/merge
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• 1798/merge
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• 1801/merge
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• 1802/merge
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• 1805/merge
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• 1807/merge
• 1808/merge
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• 1809/merge
• 1810/merge
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• 1819/merge
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• 1820/merge
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• 1822/merge
• 1821/merge
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• 1823/merge
• feature/update_picard
• 1825/merge
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• 1826/merge
• feature/add_percentage_mapped_reads_from_samtool
• 1829/merge
• feature/serial_fusion_calling
• 1830/merge
• feature/update_tiddit
• 1831/merge
• feature/rename_arriba_contigs
• 1832/merge
• 1833/merge
• feature/update_sambamba
• 1835/merge
• feature/reference_check_vt
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• 1836/merge
• feature/pdfmerger
• 1838/merge
• feature/generate_readable_commands
• feature/bwa-mem2
• 1839/merge
• feature/update_smncopynumbercaller
• 1840/merge
• feature/update_cyrius
• 1841/merge
• 1842/merge
• feature/deepvariant_housekeeper_integration
• 1843/merge
• 1844/merge
• feature/clinical_fusion_report
• feature/bcftools_norm_fix_reference
• 1845/merge
• feature/bwa-mem2_update
• feature/revert_generate_readable_commands
• 1847/merge
• feature/splice_junction_tracks
• 1848/merge
• 1849/merge
• feature/rename_quant_file
• feature/rna_resource_bump
• 1850/merge
• feature/splice_track_fix
• 1852/merge
• 1853/merge
• feature/sambamba_rollback
• 1854/merge
• 1855/merge
• feature/update_telomerecat
• feature/remove_vt_install
• 1856/merge
• 1857/merge
• feature/update_svdb
• 1858/merge
• feature/update_gatk
• feature/rna_vcfparser
• 1860/merge
• 1861/merge
• feature/star_update
• 1862/merge
• 1863/merge
• feature/update_vep
• feature/deliverable_update
• 1864/merge
• feature/arriba_update
• 1865/merge
• feature/rna_genome_ref
• 1866/merge
• feature/megafusion_update
• 1867/merge
• feature/update_starfusion
• feature/update_reference
• 1868/merge
• 1869/merge
• feature/gencode_transcripts
• 1871/merge
• 1872/merge
• feature/bedtools
• feature/rna_doc
• 1873/merge
• feature/delly_update
• 1874/merge
• feature/glnexus
• 1875/merge

fix(gatk_combine): Also remove gln_nexus from panel options