Clinical-Genomics/MIP | Coveralls - Test Coverage History & Statistics

LAST BUILD ON BRANCH 1950/merge
branch: 1950/merge

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1950/merge

develop

master

no_samtools_view

feature/read_install_config

feature/bwa_mem2_update

feature/dv_glnexus_logic

feature/plink_fixes

1697/merge

release/v9.0.5

1711/merge

1710/merge

feature/vt_decompose_to_norm

rm_path_2

1712/merge

feature/conda_perl_install

1713/merge

1714/merge

feature/vt_decompose_to_norm_expansionhunter

update-codeowners

1715/merge

feature/vt_uniq_to_norm_plink

v9.0.5

release/mip9.0.5

1716/merge

1717/merge

feature/vt_decompose_to_norm_svcombinevariantcallsets

1718/merge

feature/mip_container

1720/merge

1721/merge

feature/setup_script_gpu

feature/rm_mpileup

1723/merge

feature/container_install

1724/merge

feature/chanjo_docker

1725/merge

feature/check_mip_executable

1726/merge

feature/rm_check_future_filesystem_for_directory

1728/merge

1729/merge

feature/rm_a_dir_from_tests

feature/rm_delete_file

1730/merge

feature/replace_mip_bind

1731/merge

1732/merge

hotfix/slurm_jobids

v9.0.6

1733/merge

feature/check_vcfparser_cli

1734/merge

release/v9.1.0

1736/merge

1741/merge

feature/vcfparser_fix

1737/merge

feature/star_options

feature/carton

1742/merge

v9.1.0

1743/merge

feature/mip_executable

1744/merge

feature/median_coverage

1745/merge

feature/generate_contig_interval_file

1746/merge

feature/build_docker

1747/merge

feature/pre-commit

feature/container_constants

1748/merge

1749/merge

feature/doc

1750/merge

feature/rm_module_version

1751/merge

deeptrio_install

release/9.1.1

1752/merge

v9.1.1

feature/rm_file_format_mip

1753/merge

feature/deeptrio_install

feature/varg_docker

1754/merge

feature/slurm_mip

1756/merge

feature/load_pli_file

feature/bwakit

1758/merge

feature/rm_strict

1759/merge

1755/merge

1760/merge

feature/data_constraint

feature/markduplicates_mem

release/v9.1.2

feature/create_vep_synonyms_file

1761/merge

1762/merge

feature/loqusdb_headers

1763/merge

1764/merge

feature/broad_aln

feature/get_exome_target_bed_file

1765/merge

feature/get_path_entries

1766/merge

feature/get_gatk_intervals

1767/merge

feature/set_merged_infile_prefix

1768/merge

feature/parse_download_reference_parameter

1769/merge

feature/get_merged_infile_prefix

1770/merge

1771/merge

feature/set_conda_path

1772/merge

feature/get_package_source_env_cmds

1773/merge

feature/rtg_vcfeval_update

1774/merge

get_recipe_resources

1775/merge

1776/merge

feature/set_rankvariants_ar

feature/set_container_bind_paths

1777/merge

feature/set_programs_for_installation

1778/merge

feature/set_recipe_bwa_mem

1779/merge

feature/set_recipe_deepvariant

1780/merge

feature/turn_off_deeptrio

1781/merge

feature/update_dynamic_config_parameters

1783/merge

v9.1.2

feature/deeptrio_rollback

1784/merge

1782/merge

feature/set_recipe_gatk_variantrecalibration

1785/merge

feature/external_data

1789/merge

feature/update_with_dynamic_config_parameters

1790/merge

feature/set_recipe_on_analysis_type

feature/set_recipe_star_aln

1791/merge

feature/rna_markduplicates

1793/merge

feature/set_io_files

1794/merge

feature/get_io_files

1795/merge

feature/parse_io_outfiles

1796/merge

feature/rna_fixes

1797/merge

1798/merge

release/v9.1.3

feature/build_stream_file_cmd

1799/merge

feature/get_sampling_fastq_files

1801/merge

feature/gencode_bed_file

1802/merge

feature/get_number_of_male_reads

1805/merge

feature/update_gender_info

1807/merge

1808/merge

feature/gres_update

feature/dv_default_from_gpu_to_cpu

1809/merge

1810/merge

feature/parse_fastq_for_gender

delete-extra-docker-workflow

1811/merge

feature/metric_deliverables

1812/merge

v9.1.3

feature/glnexus_mem_reqs

1813/merge

feature/merge_v9.1.3

1814/merge

feature/genbank_haplogroup

1815/merge

1816/merge

feature/cleanup_gent-db

feature/stranger_update

1817/merge

feature/megafusion

1819/merge

feature/rename_star_fusion_out

1820/merge

feature/update_htslib

feature/case_fusions

1822/merge

1821/merge

feature/recipe_template

1823/merge

feature/update_picard

1825/merge

feature/rm_split_fastq_file

1826/merge

feature/add_percentage_mapped_reads_from_samtool

1829/merge

feature/serial_fusion_calling

1830/merge

feature/update_tiddit

1831/merge

feature/rename_arriba_contigs

1832/merge

1833/merge

feature/update_sambamba

1835/merge

feature/reference_check_vt

docker_build_n_push_action

1836/merge

feature/pdfmerger

1838/merge

feature/generate_readable_commands

feature/bwa-mem2

1839/merge

feature/update_smncopynumbercaller

1840/merge

feature/update_cyrius

1841/merge

1842/merge

feature/deepvariant_housekeeper_integration

1843/merge

1844/merge

feature/clinical_fusion_report

feature/bcftools_norm_fix_reference

1845/merge

feature/bwa-mem2_update

feature/revert_generate_readable_commands

1847/merge

feature/splice_junction_tracks

1848/merge

1849/merge

feature/rename_quant_file

feature/rna_resource_bump

1850/merge

feature/splice_track_fix

1852/merge

1853/merge

feature/sambamba_rollback

1854/merge

1855/merge

feature/update_telomerecat

feature/remove_vt_install

1856/merge

1857/merge

feature/fix_gatk_combine_cli

feature/update_svdb

1858/merge

feature/update_gatk

feature/rna_vcfparser

1860/merge

1861/merge

feature/star_update

1862/merge

1863/merge

feature/update_vep

feature/deliverable_update

1864/merge

feature/arriba_update

1865/merge

feature/rna_genome_ref

1866/merge

feature/megafusion_update

1867/merge

feature/update_starfusion

feature/update_reference

1868/merge

1869/merge

feature/gencode_transcripts

1871/merge

1872/merge

feature/bedtools

feature/rna_doc

1873/merge

feature/delly_update

1874/merge

feature/glnexus

1875/merge

1876/merge

feature/htslib

feature/multiqc

1877/merge

feature/bcftools_norm_cov

1878/merge

feature/preseq

1879/merge

1880/merge

feature/rseqc

feature/rtg-tools

1881/merge

1882/merge

feature/salmon

feature/upd

1883/merge

feature/update_rna_template

1884/merge

1885/merge

feature/chromograph

1886/merge

feature/blobfish

1887/merge

feature/rseqc_build

1888/merge

feature/bcftools_norm_update

1890/merge

feature/rna_qc_mestrics

1891/merge

feature/clinvar_ref

1892/merge

release/10.0.0

1893/merge

feature/fix_deepvariant_version_typo

1894/merge

feature/no_atomize

1895/merge

feature/bcftools_norm_recipe

1896/merge

1898/merge

feature/info_download

1899/merge

feature/rna_mt_contig

feature/norm_rna_and_mt

1900/merge

feature/recipe_bind_path_mod

1901/merge

feature/norm_glnexus

1902/merge

1903/merge

feature/rollback_telomercat

feature/vcfparser_recipe_fix

1907/merge

feature/cadd_index

1908/merge

feature/htslib_rollback

1909/merge

1910/merge

feature/bcftools_base

v10.0.0

1911/merge

release/10.0.1

feat/stranger_update

1915/merge

v10.0.1

1916/merge

feature/gnomad_3.1.1_download

release/10.0.2

1918/merge

1919/merge

feature/hmtnote

feature/gnomad_mt

1920/merge

v10.0.2

1922/merge

1921/merge

release/10.0.3

1923/merge

v10.0.3

1924/merge

feature/set_resources

1925/merge

feature/update_download_paths

1926/merge

1927/merge

feature/qc_collect_deliverable

feature/start_after_recipe

1929/merge

feature/start_after_recipe_flag

1930/merge

feature/gnu_awk

1931/merge

v10.1.0

v10.2.0

1932/merge

feature/mitodel

1933/merge

feature/found_in_tag

1936/merge

1937/merge

feature/deactivate_gatk

update_software

1939/merge

feature/limit_qc

1940/merge

1941/merge

feature/ghcr_uri

feature/update_glnexus_uri

1942/merge

1943/merge

feat/fix_glnexus_permission

1946/merge

hmtnote/quickfix

hotfix/mt_filter

1947/merge

feature/local_images

v10.2.1

1952/merge

feature/sv_freq_filter

1953/merge

1949/merge

feature/references

1955/merge

feature/hmtnote_version_regex

feature/fixing_loqus_headers

1956/merge

feature/trim_mt_anno_whitespace

1957/merge

feature/change_to_bcftools_concat

1958/merge

hotfix/add_missing_qc_value

1959/merge

v10.2.2

1960/merge

1962/merge

feature/more_qc_metrics

1964/merge

feature/increased_AF_cutoff

1965/merge

feature/paper_and_redirection

feature/fixing_test_coverage

1966/merge

release/11.0.0

1967/merge

feature/gens

gens

1972/merge

feature/gens_install

1973/merge

release/10.2.3

1974/merge

v10.2.3

1975/merge

feature/gatk_for_mt

release/10.2.4

1976/merge

v10.2.4

1978/merge

1979/merge

release/10.2.5

v10.2.5

1980/merge

v11.0.0

1984/merge

release/11.0.1

1985/merge

v11.0.1

1986/merge

upd_on_unaffected_children

1989/merge

expansionhunter_5

1990/merge

1991/merge

svdb_update

feature/gens_preproc_container_fix

1992/merge

1993/merge

feature/gens_preproc_version_1.0.2

updating_programs

1996/merge

update_databases

1998/merge

fixes_before_mip11.1

1999/merge

mip11.0.2

2000/merge

v11.0.2

2001/merge

2002/merge

release/mip11.1

release/11.0.3

2003/merge

v11.0.3

2004/merge

v11.1.0

2005/merge

release/11.1.1

2006/merge

v11.1.1

2007/merge

tiddit_update

2008/merge

2009/merge

exphun_catalog_update

salmon_memory

2010/merge

2011/merge

bump_rna_mergesamfiles_mem

2012/merge

update_megafusion

2013/merge

remove_rseqc_read_duplication

release/11.2.0

2014/merge

release/11.1.2

2017/merge

v11.1.2

feature/fixing_gens_index

2018/merge

2019/merge

release/11.1.3

2020/merge

v11.1.3

2022/merge

retroseq_recipe

2023/merge

2024/merge

me_merge_vcf

2025/merge

annotate_me

2026/merge

vep_me

2028/merge

vep_me_2

2029/merge

2030/merge

remove_exon_anno

me_filter

2032/merge

2033/merge

exp_catalog

2034/merge

2035/merge

v11.2.0

release/11.2.1

2036/merge

v11.2.1

2037/merge

2038/merge

sv_updates

2039/merge

release/11.2.2

v11.2.2

2040/merge

bump_retroseq_time

2041/merge

clinvar_update

2042/merge

release/12.0.0

2043/merge

v12.0.0

2048/merge

2050/merge

update_codeowners

vcf_rerun

annotate-clinvar-dataset

Committed 14 Sep 2021 05:43PM UTC coverage: 99.993%. Remained the same

Build Type

push

github-actions

Committed by GitHub

Commit Message

<a href="https://github.com/Clinical-Genomics/MIP/commit/<a class=hub.com/Clinical-Genomics/MIP/commit/<a class="double-link" href="https://git"><a class=hub.com/Clinical-Genomics/MIP/commit/<a class="double-link" href="https://git"><a class=hub.com/Clinical-Genomics/MIP/commit/0e8056494e2d35298befd08586945cbb59fef410">0e8056494<a href="https://github.com/Clinical-Genomics/MIP/commit/0e8056494e2d35298befd08586945cbb59fef410">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/Clinical-Genomics/MIP/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/Clinical-Genomics/MIP/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/Clinical-Genomics/MIP/commit/0e8056494e2d35298befd08586945cbb59fef410&quot;&gt;0e8056494&lt;/a&gt;&lt;a href=&quot;https://github.com/Clinical-Genomics/MIP/commit/0e8056494e2d35298befd08586945cbb59fef410&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/Clinical-Genomics/MIP/commit/0e8056494e2d35298befd08586945cbb&lt;/a&gt;59fef410&quot;>&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/Clinical-Genomics/MIP/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/Clinical-Genomics/MIP/commit/<a class="double-link" href="https://github.com/Clinical-Genomics/MIP/commit/f62b2489eb018296ea01494d4311872fd2279ead">f62b2489e</a><a href="https://github.com/Clinical-Genomics/MIP/commit/0e8056494e2d35298befd08586945cbb59fef410">&amp;quot;&amp;gt;f62b2489e&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;f62b2489e&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/Clinical-Genomics/MIP/commit/0e8056494e2d35298befd08586945cbb59fef&lt;/a&gt;410&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/Clinical-Genomics/MIP/commit/<a class="double-link" href="https://github.com/Clinical-Genomics/MIP/commit/0e268cefe">0e268cefe">0e268cefe</a>

Run Details

29619 of 29621 relevant lines covered (99.99%)

163.34 hits per line

Relevant lines Covered

29621 RELEVANT LINES 29619 COVERED LINES

163.34 HITS PER LINE

Source Files on 1950/merge

Recent builds

Builds	Branch	Commit	Type	Ran	Committer	Via	Coverage
0e8056494	1950/merge	<a href="https://github.com/Clinical-Genomics/MIP/commit/0e8056494 "><a href="https://github.com/Clinical-Genomics/MIP/commit/</a><a class="double-link" href="https://github.com/Clinical-Genomics/MIP/commit/&l...	push	14 Sep 2021 05:43PM UTC	GitHub	github-actions	99.99
617ec9bcf	1950/merge	Merge ea3661311 into 0e268cefe	push	14 Sep 2021 09:17AM UTC	GitHub	github-actions	99.99
446191e7f	1950/merge	Merge 4414e6720 into 0e268cefe	push	14 Sep 2021 09:15AM UTC	GitHub	github-actions	99.99
d3a964bb6	1950/merge	Merge debe4058a into 0e268cefe	push	13 Sep 2021 03:30PM UTC	GitHub	github-actions	99.99
bbb3b8c43	1950/merge	Merge 164250147 into 0e268cefe	push	13 Sep 2021 09:21AM UTC	GitHub	github-actions	99.99

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