bigdatagenomics / adam / 1878
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 143
Run time 2min
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1878

Pull #1423

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/cf13794c98bb49cda08051c0079135d711191311">cf13794c9<a href="https://github.com/bigdatagenomics/adam/commit/cf13794c98bb49cda08051c0079135d711191311">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/5860468fa53bd62514cbac3492f7b3ba37aaf52d">5860468fa</a>">5860468fa</a><a href="https://github.com/bigdatagenomics/adam/commit/cf13794c98bb49cda08051c0079135d711191311"> into b8477dc37">b8477dc37</a>
Pull Request #1423: BQSR refactor for perf improvements

301 of 301 new or added lines in 16 files covered. (100.0%)

4633 of 5735 relevant lines covered (80.78%)

6.45 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.22
 97.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/DinucCovariate.scala
3
90.32
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/CovariateSpace.scala
4
81.03
 -0.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
4
92.31
 92.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/BaseQualityRecalibration.scala
7
55.62
 1.24% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
10
83.05
 83.05% adam-core/src/main/scala/org/bdgenomics/adam/models/SnpTable.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
60.0
 1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
63.64
 5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
84.52
 -0.65% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.61
 3.58% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichAlignmentRecord.scala
1
88.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
44.44
 -5.56% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
85.71
 -3.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
1
77.36
 7.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
84.99
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
90.91
 -1.01% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
55.62
 1.24% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
3
81.65
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
68.53
 -2.03% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
5
88.12
 -2.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
9
87.5
 -0.1% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
77
74.74
 0.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1878.1 241
80.63
2 1878.2 241
80.63
3 1878.3 241
80.65
4 1878.4 241
80.7
5 1878.5 241
80.7
6 1878.6 241
80.71
7 1878.7 241
80.65
8 1878.8 241
80.71
Source Files on build 1878
Coverage ∆ File Lines Relevant Covered Missed Hits/Line